Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00807 ATGGCTACCGTTGCTTCACCTCCTTCTACGGATCATTTGCTGCAGAAGTTATCATTGGATGCTCAGGCCAAACCTGTTGAGATTCCAGAGCCAACGAAAAAGCAATCCGCTAATCAATATGGCTCCATTGATTCTGGCAATTCTGCTATTAGTCAGATTCCAAATGAACGGTCTGTGACTCCATTTTTACAGGACTTCATGGATCCAAGCATGTGCTATCTTCCTAATGGATATCCATCTTATTACTATGGAGGTTTTGATGGGACTGTTAATGACTGGGATGATTATTCAAGATATACGAATTCAGATGGGGTTGAAATGACTTCTGGAGTTTATGGGGATAATGGATCTCTTATGTATCACCATGGGTATGGATATGGACCCTATGGTCCTTATTCACCTGCGGCGTCTCCGGTTCCCTCTATGGGGAATGACGGTCAGCTGTATGGACCTCAGCACTATCAATATCCTCCATATTTTCAGCCTCTTACTCCAACCAGTGGGCCTTATAATCCTAGTCCCACAGTTCCTCCAACCCAGGGAGACATTTCTACCTCTGCAGCCACTGAGCAGAAGCCGGTTCCAGTTGAAACGGCTAATCCAAATGGTAATGGCTTGACAAATGGTGGGGGAACAAAGGGAAACAATGTTGCAGCTCCCTTAAAATCTACTTATCAAAATTCAACATTTGGTTCGAATGCGTATGCAAGGAGTGCTATGCCAGGACATATTCCTACGTCGGGTTATCAGGATCCCAGATATGGTTTTGACGGGTTGAGGTCTCCTTTCCCATGGTCGGACGGTCCACTGTACTCAGATGGACAGTCCAGGCTTGTCAACAACTCTAATATCACCTCTTCTATCTCAAATGCGAACAACATACAGTCTTCAAGGAATCCAAGTTTCCGTCCTGGCTCTCACTATGTTGGTTATCCTGATCCTAGACCCATGTCAGGAATGAATACCACCCAGGGTTACTTGAATAGGATGTACCCCAATAAGTTGTACGGTCAATTTGGAAACACGGTCAGATCTGGTGTTGGGTTTGCCTCACATGGTTATGATTCACGATCAAATGGACGTGTGTGGCTTGCAGTGGATAACAAATACAAGCCCAGAGGACGAAATGGTGGTTATTATGGATACGGAAATGAGAACATGGATGGTTTGAACGAGCTGAATAGGGGACCCAGAGCCAAGGGTAGCAAGAACCAGAAGGGATTCGTGCCTGTTCTAGCGGTGAAGGGACAGCTTCTACCGCCTATGAATGCAACCGAAGAGGAAGAAAAAGATAAGGTGTCTACTCCAGACCGAGACCAATACAACAAAACAGATTTTCCCGAGGAATATGTTGAGGCCAAATTCTTTGTTATTAAGTCGTACAGCGAAGATGACGTGCATAAAAGCATCAAGTATAATGTTTGGGCTAGCACACCTAATGGAAACAAGAAACTTGATGCTGCATACCAGGAAGCTCAAGAGAAGGCTGGCGGTTGCCCTGTCAATACCAGTGGGCAATTTGTTGGCCTTGCTGAGATGGTAGGACCGGTGGACTTTCAGAAGAACTTGGAGTACTGGCAACAAGACAAATGGAACGGCTGTTTCCCTGTTAAGTGGCATATTGTGAAGGATGTTCCCAACAGTCTATTAAAACACATTATTCTTGAGAACAATGAGAACAAGCCTGTTACCAATAGCAGGGACACACAGGAGATCAAGCTGGAGCCTGGACTTAAGATGGTAAAGATCTTCAAGGAGCACGCGAGCAAAACATGTATTTTGGACGATTTTGGTTTCTACGAAACCCGACAAAAGACTATCCAAGAGAAGAAAGCCAAGCAACAGCAGTTCAAGAAACAGGTTTGGGAAGGAAAGCCTATTGATGAGAAGAAGGAAGTTTCGGATGTAGTAGTGGACGTGAAAATACCAAAGCCAGTTGAAGCCTCAGACGATTTAGTAAAGGAGGAGACAAAGATCTCTGAGAATGGATCAGTGACGACAACAACAGCAGCATCAGAGAAGAGAAGTGGCGTAGCAAATGGATACTAA 2049 44.8 MATVASPPSTDHLLQKLSLDAQAKPVEIPEPTKKQSANQYGSIDSGNSAISQIPNERSVTPFLQDFMDPSMCYLPNGYPSYYYGGFDGTVNDWDDYSRYTNSDGVEMTSGVYGDNGSLMYHHGYGYGPYGPYSPAASPVPSMGNDGQLYGPQHYQYPPYFQPLTPTSGPYNPSPTVPPTQGDISTSAATEQKPVPVETANPNGNGLTNGGGTKGNNVAAPLKSTYQNSTFGSNAYARSAMPGHIPTSGYQDPRYGFDGLRSPFPWSDGPLYSDGQSRLVNNSNITSSISNANNIQSSRNPSFRPGSHYVGYPDPRPMSGMNTTQGYLNRMYPNKLYGQFGNTVRSGVGFASHGYDSRSNGRVWLAVDNKYKPRGRNGGYYGYGNENMDGLNELNRGPRAKGSKNQKGFVPVLAVKGQLLPPMNATEEEEKDKVSTPDRDQYNKTDFPEEYVEAKFFVIKSYSEDDVHKSIKYNVWASTPNGNKKLDAAYQEAQEKAGGCPVNTSGQFVGLAEMVGPVDFQKNLEYWQQDKWNGCFPVKWHIVKDVPNSLLKHIILENNENKPVTNSRDTQEIKLEPGLKMVKIFKEHASKTCILDDFGFYETRQKTIQEKKAKQQQFKKQVWEGKPIDEKKEVSDVVVDVKIPKPVEASDDLVKEETKISENGSVTTTTAASEKRSGVANGY 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3735100 3738884 - CmaCh10G008070.1 Cma10g00807 302123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00807 682 Gene3D ph1033 like domains 430 598 - -
Cma10g00807 682 MobiDBLite consensus disorder prediction 419 443 - -
Cma10g00807 682 Pfam YT521-B-like domain 453 585 IPR007275 GO:0003723
Cma10g00807 682 ProSiteProfiles YTH domain profile. 453 584 IPR007275 GO:0003723
Cma10g00807 682 MobiDBLite consensus disorder prediction 659 675 - -
Cma10g00807 682 MobiDBLite consensus disorder prediction 164 215 - -
Cma10g00807 682 MobiDBLite consensus disorder prediction 653 682 - -
Cma10g00807 682 PANTHER YTH DOMAIN-CONTAINING PROTEIN-RELATED 13 639 - -
Cma10g00807 682 MobiDBLite consensus disorder prediction 21 52 - -
Cma10g00807 682 MobiDBLite consensus disorder prediction 177 215 - -
Cma10g00807 682 MobiDBLite consensus disorder prediction 424 443 - -
Cma10g00807 682 MobiDBLite consensus disorder prediction 32 52 - -
Cma10g00807 682 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 13 639 IPR045168 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00807 Cma11g00771 CCT
Cma05g01434 Cma10g00807 CCT
Cma10g00807 Cma11g00771 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00807 Cma-Chr10:3735100 Cma17g00393 Cma-Chr17:2217497 6.54E-87 dispersed
Cma10g00807 Cma-Chr10:3735100 Cma11g00771 Cma-Chr11:3751220 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00807 - - csv:101215929 1196.03