Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00815 ATGTTTTGTTGCGGTTGCGGCTGCGTCGGACAACGACTATTCATCAAGAGAAGAAGTCGCAAACTTTGTAAGAAAAAGTTTTTTAGGCAAAACGGAGGCCTTCTATTGCAGCAAAAGGTACAAGAAGATAATGAGAGGGTCAAAATATTCTTACAGGAAGAGCTTGAAGAAGCAACTCATAGTTACAGCCAAACTAGATTTCTTGGTCAAGGAGGGTTTGGTACTGTTTACAAAGGGATACTCCATGATAACACTGTTGTTGCAGTCAAAAGGTCCAAGCGAATTGAAGAAGCCTGGATCGAACAATTCATCAACGAAGTTGTCATTCTCTCTCGAATTAACCACAAAAATATTGTTAGGCTTATTGGGTGCTGCCTAGAAGCTGAGTATCCTTTGTTAGTCTATGAATTTGTTTCCAATGGCACCCTTTCAAGCCATCTCCACCACACAGATCATGGAGAATCGTCATCTCTTTCATGGGAAACTCGTCTTGGAATTGCCTCTGAAGTTGCTGGAGCTATCTCTTACATGCATTCTGCAGCTTCAACTCCCATCTTTCATAGAGATATCAAGTCTCTTAACATTCTTTTGGATAATAATTATAGTGCAAAGGTTTCTGAGTTTGGGACTTCCAGATTTGTTTCATGTGATCAATCTCATTTGACTACGAGAGTGCATGGAACTCTTGGATACATTGATCCTGAGTACTTTAGATCAAGTCAGTATACTGAAAAGAGTGATGTATATAGTTTTGGAGTCGTAATGGTAGAGCTTTTAACGGGGAAACATCCTACCATATTTGCAAGAAATGAGGAACGAAATCTATTAGAGGACTTCATTGCATTGGAAAATGGTAAGGAGGTTGTTGGAATTGTGGATAGTGCAATAGCCAAAGATGAAGAAACGATGGAGGGTGTTAACTTGGTGGCAAAACTCACGGCCAAATGTTTAAGAGCAAATGGGAAAGAGAGTCCTACAATGAAACAAGTGTATTTACAACTAGAGGGATTGAGGAAGGCTCAAGCTCAACGTTGTTCAACATCCAATTCATTTTGCTCTATGGCTCCTAGTGATGAAGATCTTCCAAGATGA 1092 39.93 MFCCGCGCVGQRLFIKRRSRKLCKKKFFRQNGGLLLQQKVQEDNERVKIFLQEELEEATHSYSQTRFLGQGGFGTVYKGILHDNTVVAVKRSKRIEEAWIEQFINEVVILSRINHKNIVRLIGCCLEAEYPLLVYEFVSNGTLSSHLHHTDHGESSSLSWETRLGIASEVAGAISYMHSAASTPIFHRDIKSLNILLDNNYSAKVSEFGTSRFVSCDQSHLTTRVHGTLGYIDPEYFRSSQYTEKSDVYSFGVVMVELLTGKHPTIFARNEERNLLEDFIALENGKEVVGIVDSAIAKDEETMEGVNLVAKLTAKCLRANGKESPTMKQVYLQLEGLRKAQAQRCSTSNSFCSMAPSDEDLPR 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3801009 3802100 - CmaCh10G008150.1 Cma10g00815 302131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00815 363 ProSiteProfiles Protein kinase domain profile. 62 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00815 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Cma10g00815 363 Pfam Protein kinase domain 62 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00815 363 PIRSF ILK 26 351 - -
Cma10g00815 363 SMART serkin_6 62 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00815 363 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 342 IPR045274 GO:0007166
Cma10g00815 363 CDD STKc_IRAK 68 337 - -
Cma10g00815 363 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Cma10g00815 363 Gene3D Phosphorylase Kinase; domain 1 22 137 - -
Cma10g00815 363 SUPERFAMILY Protein kinase-like (PK-like) 47 334 IPR011009 -
Cma10g00815 363 PANTHER LYSM TYPE RECEPTOR KINASE 13 342 - -
Cma10g00815 363 Gene3D Transferase(Phosphotransferase) domain 1 138 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00815 Cma-Chr10:3801009 Cma15g00643 Cma-Chr15:3040061 5.39E-94 dispersed
Cma10g00815 Cma-Chr10:3801009 Cma15g00109 Cma-Chr15:493811 4.81E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68854 PF00069 Pkinase 2.60E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00815 - - mcha:111019878 511.146