Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00830 ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCTCTCACACCATCCTTGCACGAAGCAGATGCACTGTGGCAAATGAACTTAGGATCAGGTGAAATAATGGGATCTGGATCTTATCCCGTGCGACCCGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGAGCTACATGTAGATTTAATCATCCACCTAATAGGGAGCTGGCTATTGCCACCGCAAGAATGAAGGGGGAGTTCCCGGAAAGAATTGGACAACCAGAATGCCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCTACGTGCAAGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTATTGGCTATCCACTTCGCCCGAGTGAACCTGAATGTGCTTATTATATAAGAACTGGACAATGTAAGTTCGGAAATACATGTAAATTCCACCATCCTCAACCGACTAATATGATGGTCTCACTGCGTGGTTCTCCTATTTATCCAACCGTACAATCGCCAACTCCTGGTCAGCAATCATATCTAGGAGGAAGTACAAATTGGTCGAGGGCGTCGTTTATTCCCAGTCCACGATGGGAAGGCCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTCAATGAGCAGCTTGGATCGGTTTCATCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTCCCTGAGAGGCCTGGCCAGCCTGAATGTCAGTTTTACATGAAGACTGGAGATTGCAAGTTCGGTGCCGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCCCCAGATTGTGTCTTGAGTCCTATAGGCCTGCCGTTACGTCCGGGAGAACCTTTGTGCATCTTTTATTCTCGTTACGGGATCTGCAAGTTCGGTCCAAGCTGCAAGTTCGATCACCCTATGGGAATCTTCACATACAATCTCTCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCCAACGCCCCAGTTCAGCATTTGTTTGGGACGTCTTCAGGATCAACTGCACTGAACTTGTCATCTGAAGGGCTAGTTGAAGCAGGATCTGCAAAGCCGAGACGACTATCGATCTCGGAGACGCGAGAGATGCCATCTGACGACGAAAATATCGACACAGAAGGCTGA 1215 47.49 MEYDSGIPMSVTEGHSSALTPSLHEADALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNIIGYPLRPSEPECAYYIRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYLGGSTNWSRASFIPSPRWEGPSSYASLILPQGVLSVPGWNAFNEQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAAAAAAAASANAPVQHLFGTSSGSTALNLSSEGLVEAGSAKPRRLSISETREMPSDDENIDTEG 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3873704 3879501 - CmaCh10G008300.1 Cma10g00830 302146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00830 404 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Cma10g00830 404 SUPERFAMILY CCCH zinc finger 143 167 IPR036855 GO:0046872
Cma10g00830 404 MobiDBLite consensus disorder prediction 378 404 - -
Cma10g00830 404 Gene3D - 48 124 - -
Cma10g00830 404 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Cma10g00830 404 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Cma10g00830 404 PANTHER PROTEIN PHOSPHATASE RELATED 251 403 - -
Cma10g00830 404 PANTHER PROTEIN PHOSPHATASE RELATED 10 252 - -
Cma10g00830 404 SMART c3hfinal6 259 286 IPR000571 GO:0046872
Cma10g00830 404 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Cma10g00830 404 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Cma10g00830 404 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Cma10g00830 404 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Cma10g00830 404 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 251 403 - -
Cma10g00830 404 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 10 252 - -
Cma10g00830 404 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Cma10g00830 404 Gene3D - 248 334 - -
Cma10g00830 404 Gene3D - 125 175 - -
Cma10g00830 404 ProSiteProfiles Zinc finger C3H1-type profile. 259 287 IPR000571 GO:0046872
Cma10g00830 404 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Cma10g00830 404 SUPERFAMILY CCCH zinc finger 53 76 IPR036855 GO:0046872
Cma10g00830 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Cma10g00830 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Cma10g00830 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 286 IPR000571 GO:0046872
Cma10g00830 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Cma10g00830 404 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 332 IPR000571 GO:0046872
Cma10g00830 404 SUPERFAMILY CCCH zinc finger 97 122 IPR036855 GO:0046872
Cma10g00830 404 SUPERFAMILY CCCH zinc finger 263 288 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00061 Cma-Chr2:292949 Cma10g00830 Cma-Chr10:3873704 3.52E-96 dispersed
Cma06g01483 Cma-Chr6:9429815 Cma10g00830 Cma-Chr10:3873704 4.64E-86 dispersed
Cma10g00830 Cma-Chr10:3873704 Cma14g01634 Cma-Chr14:12230592 8.60E-100 dispersed
Cma19g01123 Cma-Chr19:9220179 Cma10g00830 Cma-Chr10:3873704 2.26E-06 transposed
Cma10g00830 Cma-Chr10:3873704 Cma11g00942 Cma-Chr11:4951691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35744 PF00642 zf-CCCH 2.70E-10 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00830 - - cmos:111461480 827.009