Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00831 ATGAGGCTCCAAGTGAACGACGGCGATGTCGACGACGATCTTGTTCCTCCCCCCAACTTCTCCAGTGTTGAGGATGGCATTTTCCGATCCGGCTTCCCTCAGCCTTCCAATTTTCCCTTCCTCAAGAATCTAAATCTCCGCTCCATCATATATTTGTGTCCTGAACCCTACCCAGAGGAGAATTTGGAGTTTCTTAGAGCTAATAACATCAAGCTTTTTCAATTCAAAATTGAAGGGACAAAGGAGCCTTTCGTTTCTATTCCGAAGGATGCTATTCTGGAAGCCCTAAAAATCCTAATTGATGTTAGGAATCACCCCATTTTGATCCACTGCAAGCGTGGAAAGCATCGAACAGGCTCGCTCGTGGGTTGCCTGAGGAAGTTTCAGAACTGGTGCTTGACATCAGTGTTCGAGGAGTACCAGCGATATGCAGGCGTGAAATCAAGGGCGACGGATCTACAATTCATTGAGGCATTCGACATAGAGCCTCTGAGGCAATGTGTTTACAGCATCATATACCAGTACCAAGGGTATAGCTCAAACAAGAGAAGGCTGTTGTACAGAGAAGAGAAGTTGCAGAAGCCCCAAACAACACCAGGTTTCTCACCCAAAATCTCTCCTCTTGTTGATCGATGGTTTCTCCTCACAAATCGGCACGGAGGGAAAAAAAAAAAAAAAAACACCAACAATCGATCAGCCATGACGGGTAAGGCGAAGCCGAAGAAGCATACGGCAAAAGAGATCCAGGCGAAGATCGACGCAGCTACCACCAACAGAGGCGGCGGAAAGGCCGGGCTTGCAGACCGGTCCGGCCAAGAAAAAGGTGGTCACGCGAAGTTCGAGTGCCCACACTGTAAGATTACAGCGCCTGATGTTAAAACTATGCAGATTCATCACGAGTCGAAGCATCCCAAAATCCCTTATGAGGAAGACAAGGTTGTGAATCTCCACGCTGTTCGTGTTGCTGCTGAGGCGTCTAAGCCCAAACCGGGTGTGAGAGGCAGCTTCAAGAAGTGA 1017 48.18 MRLQVNDGDVDDDLVPPPNFSSVEDGIFRSGFPQPSNFPFLKNLNLRSIIYLCPEPYPEENLEFLRANNIKLFQFKIEGTKEPFVSIPKDAILEALKILIDVRNHPILIHCKRGKHRTGSLVGCLRKFQNWCLTSVFEEYQRYAGVKSRATDLQFIEAFDIEPLRQCVYSIIYQYQGYSSNKRRLLYREEKLQKPQTTPGFSPKISPLVDRWFLLTNRHGGKKKKKNTNNRSAMTGKAKPKKHTAKEIQAKIDAATTNRGGGKAGLADRSGQEKGGHAKFECPHCKITAPDVKTMQIHHESKHPKIPYEEDKVVNLHAVRVAAEASKPKPGVRGSFKK 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3888135 3892337 + CmaCh10G008310.1 Cma10g00831 302147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00831 338 MobiDBLite consensus disorder prediction 257 278 - -
Cma10g00831 338 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 170 IPR020422 GO:0006470|GO:0008138
Cma10g00831 338 MobiDBLite consensus disorder prediction 220 245 - -
Cma10g00831 338 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 14 160 IPR029021 -
Cma10g00831 338 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 182 - -
Cma10g00831 338 SUPERFAMILY Expressed protein At2g23090/F21P24.15 260 310 - -
Cma10g00831 338 Pfam Tyrosine phosphatase family 14 164 IPR004861 -
Cma10g00831 338 CDD PFA-DSP_Siw14 14 160 - -
Cma10g00831 338 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Cma10g00831 338 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Cma10g00831 338 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Cma10g00831 338 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Cma10g00831 338 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 10 182 - -
Cma10g00831 338 Gene3D Protein tyrosine phosphatase superfamily 13 162 IPR029021 -
Cma10g00831 338 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00831 Cma-Chr10:3888135 Cma20g00235 Cma-Chr20:1119634 4.21E-74 dispersed
Cma10g00831 Cma-Chr10:3888135 Cma11g00940 Cma-Chr11:4935931 4.02E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00831 K18045 - csv:101211082 348.591