Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00857 ATGGGAGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAATCATCAGAACACGATGAAAACGCGAGGACAGCCACCAACAAGTTTTGGCATCGGAGAAAGCATTCGATTGATATCGATGCAGATAAACTTCAGCACGAGTTTAATTCGAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCCGATCCAGGAACTGCTTCTATTCCTTCTGATTCACTTCAAACATATGATGCATTGCATAATCAACACAACGATATAGAAGAACAGGCCGCGATATGCATCCAAACCATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAAGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTTCAGGCTCGTGTTCGAGCAAGGCATGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAACAAATTGAAAACCAAGCTCGAGTTCGAGAAATTGAAGATGGTTGGTGCGACACTGTTGGATCTGTTGAAGAAATTCAAGCAAAGTTGTTAAAAAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGAACAAGACAACAGGCTGCCCTCTTCCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTCGACATCAATCTCAAAGACGGAGTGATGATTCGTGAGAACGGATCAGCTGAGGGAAAAAGTAACACTAAATCTTATTTACAAACTACTGGCAAGAAAACAAACTTAGTGACTGATCAACCAAACCTCTCAAGCCAAAGAACCGCTGCCTCGCATTCTGATGGATGTGGTTCGTCATCCCCGACTAAGTCAGCTGGCATTGTAGAGGTATCTAGTGCACAGATTCAAAAGCTCAAGCATAAACTTGCACCTGAGAGGCCACTTGAACAAGTCAAACCTAAAGTAGATACCGGTTTAAGATCACGTAGCAATCCGAAAGAGAGATCTGCACCATTGATAAACAATGCAAAGAAGCGATTATCCCTGCCTAATAATGAGCCAGATACGGGGCAGTGTGCCAACGAGGACACTGGATCTCAAAAGGGGTGGATTGTGAAATCCCACGTCGATTTGAGAGAGGAACGAGTGCCAGCTAATCCTGGTAGTCAAAATCGAACGGTGAGAAGCTCGGCTGGCAAAGCGACCGTTGAACCGAAGCCGATATCGAGAGGTGACTCAAAAGCTACAAAACCCGGATCACAAAACTGA 1380 44.86 MGVSGKWFKALVGSKKSEKSQSSEHDENARTATNKFWHRRKHSIDIDADKLQHEFNSNFTPFVEESNALSDPGTASIPSDSLQTYDALHNQHNDIEEQAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRIALESETAQQKLQQQIENQARVREIEDGWCDTVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGTRQQAALFQFEPDKSSWGWNWLERWMAVRPWENRFLDINLKDGVMIRENGSAEGKSNTKSYLQTTGKKTNLVTDQPNLSSQRTAASHSDGCGSSSPTKSAGIVEVSSAQIQKLKHKLAPERPLEQVKPKVDTGLRSRSNPKERSAPLINNAKKRLSLPNNEPDTGQCANEDTGSQKGWIVKSHVDLREERVPANPGSQNRTVRSSAGKATVEPKPISRGDSKATKPGSQN 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4163007 4170552 + CmaCh10G008570.1 Cma10g00857 302173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00857 459 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Cma10g00857 459 SMART iq_5 118 139 IPR000048 GO:0005515
Cma10g00857 459 SMART iq_5 95 117 IPR000048 GO:0005515
Cma10g00857 459 MobiDBLite consensus disorder prediction 280 329 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 343 367 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 342 459 - -
Cma10g00857 459 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Cma10g00857 459 MobiDBLite consensus disorder prediction 14 34 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 18 34 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 382 405 - -
Cma10g00857 459 Gene3D - 96 138 - -
Cma10g00857 459 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Cma10g00857 459 PANTHER IQ-DOMAIN 5-RELATED 2 396 - -
Cma10g00857 459 PANTHER IQ-DOMAIN 5-RELATED 2 396 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 279 329 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00857 Cma11g00912 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00937 Cma-Chr7:4504725 Cma10g00857 Cma-Chr10:4163007 1.88E-42 dispersed
Cma09g00343 Cma-Chr9:1410126 Cma10g00857 Cma-Chr10:4163007 1.17E-61 dispersed
Cma10g00857 Cma-Chr10:4163007 Cma15g00434 Cma-Chr15:1943695 3.43E-50 dispersed
Cma16g01260 Cma-Chr16:9502494 Cma10g00857 Cma-Chr10:4163007 7.04E-18 dispersed
Cma18g00883 Cma-Chr18:7634836 Cma10g00857 Cma-Chr10:4163007 1.29E-24 dispersed
Cma18g01331 Cma-Chr18:10147836 Cma10g00857 Cma-Chr10:4163007 1.50E-36 dispersed
Cma07g00203 Cma-Chr7:940748 Cma10g00857 Cma-Chr10:4163007 8.41E-47 transposed
Cma16g00415 Cma-Chr16:2072511 Cma10g00857 Cma-Chr10:4163007 4.59E-34 transposed
Cma10g00857 Cma-Chr10:4163007 Cma11g00912 Cma-Chr11:4724208 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00857 - - csv:101204117 685.641