Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00857 ATGGGAGTTTCAGGAAAATGGTTCAAAGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAATCATCAGAACACGATGAAAACGCGAGGACAGCCACCAACAAGTTTTGGCATCGGAGAAAGCATTCGATTGATATCGATGCAGATAAACTTCAGCACGAGTTTAATTCGAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCCGATCCAGGAACTGCTTCTATTCCTTCTGATTCACTTCAAACATATGATGCATTGCATAATCAACACAACGATATAGAAGAACAGGCCGCGATATGCATCCAAACCATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAAGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTTCAGGCTCGTGTTCGAGCAAGGCATGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAACAAATTGAAAACCAAGCTCGAGTTCGAGAAATTGAAGATGGTTGGTGCGACACTGTTGGATCTGTTGAAGAAATTCAAGCAAAGTTGTTAAAAAGGCAGGAGGCTGCTGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGAACAAGACAACAGGCTGCCCTCTTCCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGATGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTCGACATCAATCTCAAAGACGGAGTGATGATTCGTGAGAACGGATCAGCTGAGGGAAAAAGTAACACTAAATCTTATTTACAAACTACTGGCAAGAAAACAAACTTAGTGACTGATCAACCAAACCTCTCAAGCCAAAGAACCGCTGCCTCGCATTCTGATGGATGTGGTTCGTCATCCCCGACTAAGTCAGCTGGCATTGTAGAGGTATCTAGTGCACAGATTCAAAAGCTCAAGCATAAACTTGCACCTGAGAGGCCACTTGAACAAGTCAAACCTAAAGTAGATACCGGTTTAAGATCACGTAGCAATCCGAAAGAGAGATCTGCACCATTGATAAACAATGCAAAGAAGCGATTATCCCTGCCTAATAATGAGCCAGATACGGGGCAGTGTGCCAACGAGGACACTGGATCTCAAAAGGGGTGGATTGTGAAATCCCACGTCGATTTGAGAGAGGAACGAGTGCCAGCTAATCCTGGTAGTCAAAATCGAACGGTGAGAAGCTCGGCTGGCAAAGCGACCGTTGAACCGAAGCCGATATCGAGAGGTGACTCAAAAGCTACAAAACCCGGATCACAAAACTGA 1380 44.86 MGVSGKWFKALVGSKKSEKSQSSEHDENARTATNKFWHRRKHSIDIDADKLQHEFNSNFTPFVEESNALSDPGTASIPSDSLQTYDALHNQHNDIEEQAAICIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRIALESETAQQKLQQQIENQARVREIEDGWCDTVGSVEEIQAKLLKRQEAAAKRERAMAYALAHQWQAGTRQQAALFQFEPDKSSWGWNWLERWMAVRPWENRFLDINLKDGVMIRENGSAEGKSNTKSYLQTTGKKTNLVTDQPNLSSQRTAASHSDGCGSSSPTKSAGIVEVSSAQIQKLKHKLAPERPLEQVKPKVDTGLRSRSNPKERSAPLINNAKKRLSLPNNEPDTGQCANEDTGSQKGWIVKSHVDLREERVPANPGSQNRTVRSSAGKATVEPKPISRGDSKATKPGSQN 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4163007 4170552 + CmaCh10G008570.1 Cma10g00857 302173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00857 459 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Cma10g00857 459 SMART iq_5 118 139 IPR000048 GO:0005515
Cma10g00857 459 SMART iq_5 95 117 IPR000048 GO:0005515
Cma10g00857 459 MobiDBLite consensus disorder prediction 280 329 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 343 367 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 342 459 - -
Cma10g00857 459 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Cma10g00857 459 MobiDBLite consensus disorder prediction 14 34 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 18 34 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 382 405 - -
Cma10g00857 459 Gene3D - 96 138 - -
Cma10g00857 459 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Cma10g00857 459 PANTHER IQ-DOMAIN 5-RELATED 2 396 - -
Cma10g00857 459 PANTHER IQ-DOMAIN 5-RELATED 2 396 - -
Cma10g00857 459 MobiDBLite consensus disorder prediction 279 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00857 - - - csv:101204117 685.641
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00857 Cma11g00912 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00937 Cma-Chr7:4504725 Cma10g00857 Cma-Chr10:4163007 1.88E-42 dispersed
Cma09g00343 Cma-Chr9:1410126 Cma10g00857 Cma-Chr10:4163007 1.17E-61 dispersed
Cma10g00857 Cma-Chr10:4163007 Cma15g00434 Cma-Chr15:1943695 3.43E-50 dispersed
Cma16g01260 Cma-Chr16:9502494 Cma10g00857 Cma-Chr10:4163007 7.04E-18 dispersed
Cma18g00883 Cma-Chr18:7634836 Cma10g00857 Cma-Chr10:4163007 1.29E-24 dispersed
Cma18g01331 Cma-Chr18:10147836 Cma10g00857 Cma-Chr10:4163007 1.50E-36 dispersed
Cma07g00203 Cma-Chr7:940748 Cma10g00857 Cma-Chr10:4163007 8.41E-47 transposed
Cma16g00415 Cma-Chr16:2072511 Cma10g00857 Cma-Chr10:4163007 4.59E-34 transposed
Cma10g00857 Cma-Chr10:4163007 Cma11g00912 Cma-Chr11:4724208 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g808 Blo03g01027 . . . . . Bma14g00379 Bma07g01423 Cmo10g00895 Cmo11g00931 Cma10g00857 . . . . . Cpe18g00165 . . . . . . . . . . . . . . . Cone5ag1312 Cone18ag0162 Cone11ag1428 Lsi06g00645 . . . . . . Bda09g00275 . Bpe11g00883 . Bma11g00338 . . . Cma11g00912 . . . . . . . . . . . . Cla03g01384 Cam03g1463 Cec03g1500 Cco03g1495 Clacu03g1486 Cmu03g2044 Cre03g1715 . Csa01g03281 Chy02g01601 Cme02g00846
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01355 CCT,CST,ECH 99 267 IQD Protein Family AT3G09710 55.2 4.6e-47 186.4
Cma06g00359 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.5e-61 232.6
Cma15g00434 CCT,CST,ECH 2 464 IQD Protein Family AT3G52290 54.5 6.7e-101 365.2
Cma04g02600 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.7 1.1e-100 364.4
Cma10g00857 CCT 1 394 IQD Protein Family AT3G22190 56.8 1.1e-92 337.8
Cma11g00912 CCT 43 448 IQD Protein Family AT3G22190 55.0 5.8e-89 325.5
Cma01g01729 . 1 434 IQD Protein Family AT2G26180 59.5 3.9e-114 409.1
Cma09g00343 . 1 438 IQD Protein Family AT2G26180 58.0 1.1e-111 401.0
Cma07g00203 . 1 279 IQD Protein Family AT2G33990 51.6 4.0e-64 242.3
Cma16g00415 . 40 223 IQD Protein Family AT2G33990 52.9 1.2e-47 187.6
Cma07g00203 . 1 253 IQD Protein Family AT3G15050 51.4 7.7e-60 228.0
Cma16g00415 . 43 216 IQD Protein Family AT3G15050 61.0 4.1e-53 205.7
Cma06g00946 . 1 500 IQD Protein Family AT4G00820 55.7 8.8e-127 451.4
Cma06g00946 . 1 500 IQD Protein Family AT1G01110 52.7 4.0e-124 442.6
Cma08g00741 CCT,CST,ECH 220 616 IQD Protein Family AT3G16490 51.6 5.9e-72 268.9
Cma17g00759 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 51.5 4.2e-70 262.7
Cma10g00673 CST 1 376 IQD Protein Family AT3G16490 53.1 5.2e-68 255.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00857 Cma_Chr10 FPKM 12.238095 12.623598 8.078899 7.760934 18.69108 17.777531 18.54384 5.770852 5.528913 4.603977