Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00869 ATGGCCACTCGGGCACTTGTTTCATCTTCCTTAACCTCCTCGGGGGGCGCCGCCAGACAAAGATTTGGTGCCAAACCCTGTCTTGGATCCTCCACAAAACAAGCTTCTTTTGTTGTTAGAGCTGAAGCCACTCCTCCCGTTAAGCAAGGAGCCAACCGAGCATTATGGTTTGCTTCAAAACAAAGTCTTTCTTACTTGGATGGAAGTCTCCCAGGCGATTACGGGTTCGACCCACTAGGGCTATCGGACCCTGAAGGCACGGGAGGGTTCATCGAGCCGAGATGGTTGGCATACGGGGAGGTAATCAACGGGCGGTTCGCAATGTTGGGAGTAGTAGGAGCCATAGCCCCAGAGATATTAGGGTCACTAGGGCTAATCCCACCAGAAACAGCCCTCCCATGGTTCAAAACTGGGGTGATCCCACCAGCAGGGACCTACAACTATTGGGCAGACCCCTACACACTATTTGTACTTGAAATGGCTCTAATGGGGTTCGCTGAACATAGAAGATTTCAAGATTGGGCTAAGCCAGGGTCCATGGGGAAGCAGTACTTCTTGGGTCTAGAGAGGTTCTTGGGTGGGTCAGGGGACCCAGCTTACCCAGGTGGGCCCTTGTTCAACCCTCTAGGGTTTGGTAAAGATGAGAAGTCAATGAACGATTTGAAGCTAAAAGAAGTGAAAAATGGAAGGCTTGCAATGTTGGCCATATTGGGTTTCTTTATTCAAGGACTCGTCACTGGCGTTGGCCCTTACCAAAACCTTTTGGACCATTTCTTCTCAAGAATCCTCTCCCCATTTTCACTATTCCTTCTGATTCTCGCCATTTCCACCCAAACCCATCTCTCCTTTTCATCAATAGACAAACCCCTCAACCCAACAGACATCCACGATCTTCTGCTCCGTTACGGTTTTCCCGCTGGTCTCTTACCCAACAATGTCAAGTCCTACACACTCTCAGACGACGGCGCCTTCGAAATCGAACTCGAAACCGATTGCTATGTGATGCTCAGTGAGCTGGTTTATTACGAAAAGAAAATCACGGGGAAATTGAGCTATGGGTCTGTGGCCGATGTTTCTGGGATTCAAGTTAAGAAGCTGTTCTTGTGTGTCTCTGTTTCTGGGTTCAAGTCTAATCAAGGATCTGGAACCATCGTGTTCTTTGTCGGACCCTTGTCTGAAACTTTTCCGGCAGATATGTTCCGGACGATTCCTGGTTGTAGAAGGAAGGCTTACCTAGGAGGAAGAACAGAAGCCATGTGA 1260 48.97 MATRALVSSSLTSSGGAARQRFGAKPCLGSSTKQASFVVRAEATPPVKQGANRALWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGVVGAIAPEILGSLGLIPPETALPWFKTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLERFLGGSGDPAYPGGPLFNPLGFGKDEKSMNDLKLKEVKNGRLAMLAILGFFIQGLVTGVGPYQNLLDHFFSRILSPFSLFLLILAISTQTHLSFSSIDKPLNPTDIHDLLLRYGFPAGLLPNNVKSYTLSDDGAFEIELETDCYVMLSELVYYEKKITGKLSYGSVADVSGIQVKKLFLCVSVSGFKSNQGSGTIVFFVGPLSETFPADMFRTIPGCRRKAYLGGRTEAM 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4282043 4284914 + CmaCh10G008690.1 Cma10g00869 302185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00869 419 Pfam Protein of unknown function, DUF538 296 400 IPR007493 -
Cma10g00869 419 Gene3D Chlorophyll a/b binding protein domain 54 267 - -
Cma10g00869 419 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 258 - -
Cma10g00869 419 Pfam Chlorophyll A-B binding protein 64 242 IPR022796 -
Cma10g00869 419 Gene3D - 275 408 IPR036758 -
Cma10g00869 419 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 258 IPR001344 GO:0009765|GO:0016020
Cma10g00869 419 SUPERFAMILY Chlorophyll a-b binding protein 52 259 - -
Cma10g00869 419 SUPERFAMILY At5g01610-like 267 407 IPR036758 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01207 Cma-Chr2:7141753 Cma10g00869 Cma-Chr10:4282043 5.59E-26 dispersed
Cma10g00869 Cma-Chr10:4282043 Cma12g00551 Cma-Chr12:2857173 3.83E-47 dispersed
Cma20g00037 Cma-Chr20:161345 Cma10g00869 Cma-Chr10:4282043 4.58E-26 dispersed
Cma10g00869 Cma-Chr10:4282043 Cma11g00901 Cma-Chr11:4620124 1.71E-162 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00869 K08909 - csv:101202993 483.026