Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00910 ATGATTCAAGACGAAGGCATATCCACCATAACTTCCACCCCTCTCCAATTCTTCACAATGATGCCTCTTTCACCCAAATTGGGTTCTCCATATCTATGGCTTAGAGAGCTCAAATCTGAGGAAAGGGGCTTGTATCTAATCCATTTGTTGCTTACTTGTGCGAACCATGTAGCTGTTGGTAGCCTTGAGAGTGCTAATCTTGCCCTTGATCAAATATCACATCTTACTTCTGCTGATGGTGATACAATGCAGCGCATTGGGGCGTACTTCGCCAAGGCACTTGCGGATCGAATCCTCAAGACATGGCCTGGTCTTTACAAGGCCTTTAACTCCACTAAGATACCAATGGTTTCAGAGGAGATTCTTGTTAAGAAACTGTTCTTTGAAACGTTTCCTTTTCTCAAGGTGGCTTTTGTGCTTACTAATCAAGCTATTGTTGAAGCCATGGAGGGGGAAAAGATGGTTCATATAATTGATCTTAATGGGAATGAAACTACTCACTGGCTTGCACTTATGCAAGTATTGAGTGCTAGGCCTGAAGGGCCTCCCCATTTGAGAATCACTGGGGTTCATCCACAGAAGGAGATTCTGGATCAAATGGCTCCTAGGTTGACAGAAGTAGCTGAAAAATTGGATATCCCGTTTCAATTCAATTCCGTTATCAGCCGACTCGAGGATCTCGATATCGAAAAGCTTCGTGTAAAAACCGGGGAGGCTCTGGCTATCAATTCAGTTCTTCAGTTGCACACCCTTTTGGGCTCTGATGAAGTTTTGCAAAAACCATCTTCATCAGCAGCCAAGAGTGCAAATGTAGTTCAATACTCGAGATACTCGTTGAGCGAGTTACTCGACAAGGATTTGGTTAACGGGTGCAATCCGAGTCCCGACTCGGTTTCGTCATCAGCTAATGCAACAAAGATCAACAGATTTTTGGATGGATTGTGGAGCTTAACGCCTAAGGTGATGATTGTAACAGAACAAGATTCAAACCATAATGGTTCAACTCTTATGGAGAGATTACTAGAGGCACTCCACACCTATGCAGCTATTTTTGATTGCTTGGAGTCTAACATGTCAAGAACATCCGTGGAGAGGTTGAAGTTGGAAAAGATGCTATTTGGGGAAGAGATTAAGAACATCATAACTTGTGAGGGAGCAGAGAGGAAGGAGCGACATGAAAAACACAAGAAATGGTGTCAACGATTCGATATCGCCGGGTTTAGGCATGTGTCTTTGAGTTATTATGGCATGGTGCAGGCACAGAGCCTGCTGTAG 1275 43.76 MIQDEGISTITSTPLQFFTMMPLSPKLGSPYLWLRELKSEERGLYLIHLLLTCANHVAVGSLESANLALDQISHLTSADGDTMQRIGAYFAKALADRILKTWPGLYKAFNSTKIPMVSEEILVKKLFFETFPFLKVAFVLTNQAIVEAMEGEKMVHIIDLNGNETTHWLALMQVLSARPEGPPHLRITGVHPQKEILDQMAPRLTEVAEKLDIPFQFNSVISRLEDLDIEKLRVKTGEALAINSVLQLHTLLGSDEVLQKPSSSAAKSANVVQYSRYSLSELLDKDLVNGCNPSPDSVSSSANATKINRFLDGLWSLTPKVMIVTEQDSNHNGSTLMERLLEALHTYAAIFDCLESNMSRTSVERLKLEKMLFGEEIKNIITCEGAERKERHEKHKKWCQRFDIAGFRHVSLSYYGMVQAQSLL 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4525897 4527171 + CmaCh10G009100.1 Cma10g00910 302226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00910 424 Pfam GRAS domain family 46 424 IPR005202 -
Cma10g00910 424 PANTHER SCARECROW-LIKE PROTEIN 3 2 424 IPR030008 GO:0003700|GO:0005634|GO:0009739
Cma10g00910 424 ProSiteProfiles GRAS family profile. 37 424 IPR005202 -
Cma10g00910 424 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 424 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00910 Cma-Chr10:4525897 Cma18g00879 Cma-Chr18:7609105 0 dispersed
Cma10g00910 Cma-Chr10:4525897 Cma11g00865 Cma-Chr11:4396210 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35747 PF03514 GRAS 5.60E-119 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00910 - - cmax:111485462 827.394