Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00928 ATGCAGTCAAAGTCAGAAACCAATAATCAGCTCCAATCTGATCCAAATGGTGCTCCATCCACGACTATCTATTATGAACCCTGGTGCAGTTCTATGGGGTACAGTCCTTTTCCGTTACCTGTGGTTGGGGGAAATGCTTCCAGTTCGACTTCTCTTGAATTCCCTAATGGTGGTTCAGAGTCAAATGATGGCCAGTCTGTGTCTAATAATGATGTAAACGATGAAGAAGATGATGTTTCCAAAGAAGTGCAAGCTACTGGATCTCCTCATTCTGCGGGAAGCTACAGACAGGATGCTCAGAAGATGCAGCATGTCTCATCCAATTTGCCAGCTATGCACGGTGAATGTCTGACACAGTCGACACAACTTGAACTTGTTGGTCACTCTATTGCTTGTGCATCAAATCCCTATCAGGATCCATATTATGGGGGAATGATGGCTTTCTATGGTCATCAGCCCGTGGGCTATCCTATGGTCGGAGCGCCACATGCTAGAATGCCATTGCCCATTGAGATAGCACAAGACCCCGTTTTCGTGAATGCAAAGCAATACCAAGGAATTTTGAGGCGAAGGCAAGCGCGTGCAAAAGCCGAGGCTGAAAAGAAGTTGATAAAAGCTAGAAAGCCATACCTTCACGAGTCTAGACACCAGCATGCCATAAGAAGGTCGAGGAGCAGTGGAGGGCGTTTTGCCAAGAAAAATGAAGCGGATGGAAAGGAGAGTTCTGAACAGCAGCACGGAAGCTCCTTGACAATCAAGGCCTCTGAGTAG 771 46.82 MQSKSETNNQLQSDPNGAPSTTIYYEPWCSSMGYSPFPLPVVGGNASSSTSLEFPNGGSESNDGQSVSNNDVNDEEDDVSKEVQATGSPHSAGSYRQDAQKMQHVSSNLPAMHGECLTQSTQLELVGHSIACASNPYQDPYYGGMMAFYGHQPVGYPMVGAPHARMPLPIEIAQDPVFVNAKQYQGILRRRQARAKAEAEKKLIKARKPYLHESRHQHAIRRSRSSGGRFAKKNEADGKESSEQQHGSSLTIKASE 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4642922 4645614 - CmaCh10G009280.1 Cma10g00928 302244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00928 256 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 230 IPR001289 GO:0003700|GO:0006355
Cma10g00928 256 MobiDBLite consensus disorder prediction 1 25 - -
Cma10g00928 256 MobiDBLite consensus disorder prediction 42 69 - -
Cma10g00928 256 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 34 249 - -
Cma10g00928 256 PRINTS CCAAT-binding transcription factor subunit B signature 176 198 IPR001289 GO:0003700|GO:0006355
Cma10g00928 256 PRINTS CCAAT-binding transcription factor subunit B signature 207 230 IPR001289 GO:0003700|GO:0006355
Cma10g00928 256 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 34 249 IPR001289 GO:0003700|GO:0006355
Cma10g00928 256 MobiDBLite consensus disorder prediction 39 104 - -
Cma10g00928 256 ProSitePatterns NF-YA/HAP2 subunit signature. 178 198 IPR018362 GO:0003677|GO:0016602
Cma10g00928 256 SMART cbf3 172 233 IPR001289 GO:0003700|GO:0006355
Cma10g00928 256 Gene3D - 173 235 - -
Cma10g00928 256 ProSiteProfiles NF-YA/HAP2 family profile. 173 233 IPR001289 GO:0003700|GO:0006355
Cma10g00928 256 MobiDBLite consensus disorder prediction 208 227 - -
Cma10g00928 256 MobiDBLite consensus disorder prediction 228 242 - -
Cma10g00928 256 MobiDBLite consensus disorder prediction 84 104 - -
Cma10g00928 256 MobiDBLite consensus disorder prediction 205 256 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00928 Cma20g00089 CCT
Cma10g00928 Cma11g00848 CCT
Cma10g00928 Cma20g00089 ECH
Cma10g00928 Cma11g00848 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00928 Cma-Chr10:4642922 Cma17g00955 Cma-Chr17:7113927 2.75E-47 dispersed
Cma12g01317 Cma-Chr12:10090307 Cma10g00928 Cma-Chr10:4642922 9.40E-29 dispersed
Cma10g00928 Cma-Chr10:4642922 Cma11g00848 Cma-Chr11:4281494 5.02E-164 wgd
Cma10g00928 Cma-Chr10:4642922 Cma02g01253 Cma-Chr2:7361987 3.34E-97 wgd
Cma10g00928 Cma-Chr10:4642922 Cma20g00089 Cma-Chr20:381712 2.23E-94 wgd
Cma10g00928 Cma-Chr10:4642922 Cma08g00526 Cma-Chr8:3030325 2.02E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35748 PF02045 CBFB_NFYA 1.60E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00928 K08064 - csv:101212860 433.721