Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00972 ATGTTCGGGATGACAGCAGAGGTAGCGACCGTGACAACAGTAGTGGTAGTAGTCACGATGGCGGGGTGGTTGCTCGGTGGAGTTGATGGTAGACAACCAGTGTTGCATAGAGTTGGAGGAGGAAAATACACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCACGAGCACTTTTACGTTGGTGATTGGCTCTATTTTGGGTTCGATAAACGTATCTACAACGTGCTACAAGTGAACAAAACAAGCTACGACAGTTGCAACGAGAATGATTTCGTTTTCAACGTGACAAGAGGCGGACGAGACGTGTTCAACCTAACACAAGCAAAGCCATACTACTTCCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTGCTATCTTTGTTGAAGACTCTCCTCCCATTTCATCACCCAAAATTGCAAACCATTCTTCATCTATTCAACCATTAAAGCCTCTCTCATCCCTCTCCCTATTCATCACCATTGCCTTCACTAAATTCCTTCTAAATTAG 522 43.3 MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5017638 5018223 - CmaCh10G009720.1 Cma10g00972 302288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00972 173 PANTHER BLUE COPPER PROTEIN 12 143 IPR039391 GO:0009055
Cma10g00972 173 Pfam Plastocyanin-like domain 45 126 IPR003245 GO:0009055
Cma10g00972 173 PANTHER EARLY NODULIN-LIKE PROTEIN 20 12 143 - -
Cma10g00972 173 SUPERFAMILY Cupredoxins 35 132 IPR008972 -
Cma10g00972 173 ProSiteProfiles Phytocyanin domain profile. 34 134 IPR003245 GO:0009055
Cma10g00972 173 Gene3D - 35 141 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00972 - - - cmos:111461613 326.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00972 Cma-Chr10:5017638 Cma11g01160 Cma-Chr11:6711492 6.39E-44 dispersed
Cma10g00972 Cma-Chr10:5017638 Cma15g01180 Cma-Chr15:7467074 3.98E-12 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma02g00095 . 24 145 Phytocyanin Superfamily AT4G28365 54.9 5.4e-37 151.8
Cma02g00095 . 17 149 Phytocyanin Superfamily AT4G32490 50.4 1.3e-36 150.6
Cma13g01046 CST 12 135 Phytocyanin Superfamily AT3G18590 59.5 3.9e-37 152.1
Cma18g00027 CST 12 146 Phytocyanin Superfamily AT1G48940 54.7 4.3e-38 155.2
Cma13g01046 CST 12 137 Phytocyanin Superfamily AT1G48940 57.8 8.2e-37 151.0
Cma12g00366 CCT 9 165 Phytocyanin Superfamily AT5G25090 57.1 1.1e-39 160.6
Cma05g00347 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 7.8e-43 171.0
Cma05g00347 CCT 21 171 Phytocyanin Superfamily AT4G31840 55.0 1.4e-44 176.8
Cma11g01159 . 23 165 Phytocyanin Superfamily AT3G01070 54.4 6.3e-39 157.9
Cma11g01159 . 27 154 Phytocyanin Superfamily AT5G15350 56.3 7.4e-43 171.0
Cma20g00126 . 52 259 Phytocyanin Superfamily AT1G08500 52.4 1.7e-50 196.8
Cma10g00972 . 32 172 Phytocyanin Superfamily AT2G27035 53.9 2.3e-41 166.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00972 Cma_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0