Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00972 | ATGTTCGGGATGACAGCAGAGGTAGCGACCGTGACAACAGTAGTGGTAGTAGTCACGATGGCGGGGTGGTTGCTCGGTGGAGTTGATGGTAGACAACCAGTGTTGCATAGAGTTGGAGGAGGAAAATACACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCACGAGCACTTTTACGTTGGTGATTGGCTCTATTTTGGGTTCGATAAACGTATCTACAACGTGCTACAAGTGAACAAAACAAGCTACGACAGTTGCAACGAGAATGATTTCGTTTTCAACGTGACAAGAGGCGGACGAGACGTGTTCAACCTAACACAAGCAAAGCCATACTACTTCCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTGCTATCTTTGTTGAAGACTCTCCTCCCATTTCATCACCCAAAATTGCAAACCATTCTTCATCTATTCAACCATTAAAGCCTCTCTCATCCCTCTCCCTATTCATCACCATTGCCTTCACTAAATTCCTTCTAAATTAG | 522 | 43.3 | MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5017638 | 5018223 | - | CmaCh10G009720.1 | Cma10g00972 | 302288 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00972 | 173 | PANTHER | BLUE COPPER PROTEIN | 12 | 143 | IPR039391 | GO:0009055 | |
Cma10g00972 | 173 | Pfam | Plastocyanin-like domain | 45 | 126 | IPR003245 | GO:0009055 | |
Cma10g00972 | 173 | PANTHER | EARLY NODULIN-LIKE PROTEIN 20 | 12 | 143 | - | - | |
Cma10g00972 | 173 | SUPERFAMILY | Cupredoxins | 35 | 132 | IPR008972 | - | |
Cma10g00972 | 173 | ProSiteProfiles | Phytocyanin domain profile. | 34 | 134 | IPR003245 | GO:0009055 | |
Cma10g00972 | 173 | Gene3D | - | 35 | 141 | IPR008972 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00972 | Cma-Chr10:5017638 | Cma11g01160 | Cma-Chr11:6711492 | 6.39E-44 | dispersed | |
Cma10g00972 | Cma-Chr10:5017638 | Cma15g01180 | Cma-Chr15:7467074 | 3.98E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00972 | - | - | cmos:111461613 | 326.25 |