Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00972 ATGTTCGGGATGACAGCAGAGGTAGCGACCGTGACAACAGTAGTGGTAGTAGTCACGATGGCGGGGTGGTTGCTCGGTGGAGTTGATGGTAGACAACCAGTGTTGCATAGAGTTGGAGGAGGAAAATACACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCACGAGCACTTTTACGTTGGTGATTGGCTCTATTTTGGGTTCGATAAACGTATCTACAACGTGCTACAAGTGAACAAAACAAGCTACGACAGTTGCAACGAGAATGATTTCGTTTTCAACGTGACAAGAGGCGGACGAGACGTGTTCAACCTAACACAAGCAAAGCCATACTACTTCCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAGGTTGCTATCTTTGTTGAAGACTCTCCTCCCATTTCATCACCCAAAATTGCAAACCATTCTTCATCTATTCAACCATTAAAGCCTCTCTCATCCCTCTCCCTATTCATCACCATTGCCTTCACTAAATTCCTTCTAAATTAG 522 43.3 MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSPPISSPKIANHSSSIQPLKPLSSLSLFITIAFTKFLLN 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5017638 5018223 - CmaCh10G009720.1 Cma10g00972 302288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00972 173 PANTHER BLUE COPPER PROTEIN 12 143 IPR039391 GO:0009055
Cma10g00972 173 Pfam Plastocyanin-like domain 45 126 IPR003245 GO:0009055
Cma10g00972 173 PANTHER EARLY NODULIN-LIKE PROTEIN 20 12 143 - -
Cma10g00972 173 SUPERFAMILY Cupredoxins 35 132 IPR008972 -
Cma10g00972 173 ProSiteProfiles Phytocyanin domain profile. 34 134 IPR003245 GO:0009055
Cma10g00972 173 Gene3D - 35 141 IPR008972 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00972 Cma-Chr10:5017638 Cma11g01160 Cma-Chr11:6711492 6.39E-44 dispersed
Cma10g00972 Cma-Chr10:5017638 Cma15g01180 Cma-Chr15:7467074 3.98E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00972 - - cmos:111461613 326.25