Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00973 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCGGCTCCGATTGTGGATGGAGATGTCGTAGCTCGACCAGCTGATCCTGAAGTTGTGGTGGAAGATGATTATTCAGATGAAGAGATCGATGTTGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGACTTAAAGAGCAAAGTAAGGTTAAGGAAGGGATCGATATTGCGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCTCATGATGGGATCTTGAAGTACATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGAAAGCCAGTAACCGGGGCATCGGATAATCTGCGTGAATGGTGGAAAGACAAGGTTAGATTTGATAGAAACGGACCGGCTGCCATAGCTAAGTACCAGGCAGACAATGCAATTCCTGGACGAAACGATGGGTGTAATTCGATCGGTCCAACCCCGCACACCTTGCAGGAACTTCAGGATACGACCCTTGGATCACTTTTATCAGCTTTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGCGTTCCTCCACCGTGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGGTTGTCGAAGGACCAAGGTCCTCCACCTTACAAGAAGCCCCACGACTTGAAAAAAGCGTGGAAAGTTGGTGTTTTGACTGCTGTAATCAAGCATATGTCCCCTGATATCGCCAAGATCCGAAAACTTGTTAGACAGTCGAAGTGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGGTCTTGGCTCGGGAGCTTTATCCCAATTCTTGCCCGCCTTTGTCTTCCGGTGGGGGCAGTGGATCATTGGTCATTAACGATTGCAGCGAGTACGATGTAGAAGGCGCTGAGGAGGAACCGAGCTTTGATGTTCAAGATCGTAAACCTGATAACCATAGCTCGTTCAACTTGGGAATGGAGAGAACGAGAGAACGGGTGCCCCTTCGACAACCACCATATGCAATCAAAGGAGAGGTTTCTACGAACTTAGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAACACGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAGCTTCGTCTTGGGTTCAACGACAGGACGTCTAGAGACAATCATCAGTTGTCCTGTCCATATAGAACTTCTTCAGAATTCAATGGCTCAAGTTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAGTCATTTGCCCCGCCCAAGTCAGCTCCACCCCCAGTTAGCTCGGTTCCATCGTCCTTCGACCTGTCCACTTTAGGCGTTCCAGAAGACGACCAAAAGATGATCAGGGAGCTCATGTCGATCTACGACACCAACATCCAAGGAAACAAAAGCAACGTAAACACCGGTAACAGTGCTATCACGGAGAACCAAAATCTTCCTCAGTTAAAGATACAACCTCAACAAGACGAATACTTTCGCAATCAAGGTATAATGATGGACGGAAACTTCTTCGAGGGATCGAACGTTTCTAGCAGCCAATTCAACCAGTTTAAGCCAATGAATTCACCTTTCGAAAACAACCACCACGAGCACAGCAATAACAACAACAACAACAACAACTTCCACATGATGTTTGGCTCTCCATTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGTGCAGCAGCCATCGATACACTGTCGAAACAGCAGGATATTCCATTATGGTATCATTGA 1863 46.54 MMMMFNEMGFCDDMDFLSAPIVDGDVVARPADPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLSKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPNSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHSSFNLGMERTRERVPLRQPPYAIKGEVSTNLDFMRKRKPTSDLNTMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLSCPYRTSSEFNGSSFHVNEVKPVIFPQSFAPPKSAPPPVSSVPSSFDLSTLGVPEDDQKMIRELMSIYDTNIQGNKSNVNTGNSAITENQNLPQLKIQPQQDEYFRNQGIMMDGNFFEGSNVSSSQFNQFKPMNSPFENNHHEHSNNNNNNNNFHMMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYH 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5025672 5027534 + CmaCh10G009730.1 Cma10g00973 302289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00973 620 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Cma10g00973 620 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Cma10g00973 620 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 619 IPR006957 GO:0005634
Cma10g00973 620 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
Cma10g00973 620 Coils Coil 48 68 - -
Cma10g00973 620 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Cma10g00973 620 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 619 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00973 K14514 EIN3; ethylene-insensitive protein 3 - csv:101206055 1102.04
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00807 Cma-Chr4:4140179 Cma10g00973 Cma-Chr10:5025672 2.31E-108 dispersed
Cma04g02492 Cma-Chr4:17074489 Cma10g00973 Cma-Chr10:5025672 0 dispersed
Cma10g00973 Cma-Chr10:5025672 Cma15g00551 Cma-Chr15:2568863 0 dispersed
Cma10g00973 Cma-Chr10:5025672 Cma11g00814 Cma-Chr11:3982932 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00814 . 2 602 EIL Transcription Factor Family AT2G27050 61.6 8.0e-198 687.6
Cma10g00973 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 8.0e-190 661.0
Cma04g02492 . 7 523 EIL Transcription Factor Family AT2G27050 58.3 1.1e-159 560.8
Cma15g00551 . 1 508 EIL Transcription Factor Family AT2G27050 59.5 4.3e-159 558.9
Cma11g00834 . 66 366 EIL Transcription Factor Family AT2G27050 57.8 1.1e-90 331.6
Cma11g00834 . 73 327 EIL Transcription Factor Family AT5G21120 51.9 2.4e-73 273.9
Cma11g00834 . 58 573 EIL Transcription Factor Family AT1G73730 54.2 4.0e-138 489.2
Cma11g00814 . 36 334 EIL Transcription Factor Family AT1G73730 62.9 4.4e-105 379.4
Cma10g00973 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 8.3e-104 375.2
Cma04g02492 . 39 334 EIL Transcription Factor Family AT1G73730 60.4 9.5e-100 361.7
Cma15g00551 . 40 335 EIL Transcription Factor Family AT1G73730 59.7 2.3e-98 357.1
Cma16g00693 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 5.6e-76 282.7
Cma04g00807 . 111 360 EIL Transcription Factor Family AT1G73730 54.5 1.8e-74 277.7
Cma10g00973 . 3 619 EIL Transcription Factor Family AT3G20770 62.5 1.6e-207 719.9
Cma11g00814 . 3 602 EIL Transcription Factor Family AT3G20770 61.5 2.0e-207 719.5
Cma04g02492 . 6 609 EIL Transcription Factor Family AT3G20770 51.5 1.1e-163 574.3
Cma15g00551 . 7 512 EIL Transcription Factor Family AT3G20770 59.0 3.0e-158 556.2
Cma11g00834 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 6.3e-92 335.9
Cma11g00834 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.1e-70 264.2
Cma16g00693 . 19 356 EIL Transcription Factor Family AT5G10120 57.3 4.1e-104 375.9
Cma04g00807 . 108 445 EIL Transcription Factor Family AT5G10120 58.2 3.5e-103 372.9
Cma11g00834 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 5.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35751 PF04873 EIN3 3.80E-129 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00973 Cma_Chr10 FPKM 121.547783 135.566269 107.425919 111.354935 86.531837 95.08931 81.633522 205.261978 186.884247 178.544434