Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00973 ATGATGATGATGTTCAATGAGATGGGATTTTGTGATGATATGGATTTCCTTTCGGCTCCGATTGTGGATGGAGATGTCGTAGCTCGACCAGCTGATCCTGAAGTTGTGGTGGAAGATGATTATTCAGATGAAGAGATCGATGTTGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGACTTAAAGAGCAAAGTAAGGTTAAGGAAGGGATCGATATTGCGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCGAGGGCTCATGATGGGATCTTGAAGTACATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGTTTTGTATATGGAATAATTCCAGAGAAGGGAAAGCCAGTAACCGGGGCATCGGATAATCTGCGTGAATGGTGGAAAGACAAGGTTAGATTTGATAGAAACGGACCGGCTGCCATAGCTAAGTACCAGGCAGACAATGCAATTCCTGGACGAAACGATGGGTGTAATTCGATCGGTCCAACCCCGCACACCTTGCAGGAACTTCAGGATACGACCCTTGGATCACTTTTATCAGCTTTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGCGTTCCTCCACCGTGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGGTTGTCGAAGGACCAAGGTCCTCCACCTTACAAGAAGCCCCACGACTTGAAAAAAGCGTGGAAAGTTGGTGTTTTGACTGCTGTAATCAAGCATATGTCCCCTGATATCGCCAAGATCCGAAAACTTGTTAGACAGTCGAAGTGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGGTCTTGGCTCGGGAGCTTTATCCCAATTCTTGCCCGCCTTTGTCTTCCGGTGGGGGCAGTGGATCATTGGTCATTAACGATTGCAGCGAGTACGATGTAGAAGGCGCTGAGGAGGAACCGAGCTTTGATGTTCAAGATCGTAAACCTGATAACCATAGCTCGTTCAACTTGGGAATGGAGAGAACGAGAGAACGGGTGCCCCTTCGACAACCACCATATGCAATCAAAGGAGAGGTTTCTACGAACTTAGATTTTATGCGAAAGAGGAAACCGACCAGCGATCTGAACACGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAGCTTCGTCTTGGGTTCAACGACAGGACGTCTAGAGACAATCATCAGTTGTCCTGTCCATATAGAACTTCTTCAGAATTCAATGGCTCAAGTTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAGTCATTTGCCCCGCCCAAGTCAGCTCCACCCCCAGTTAGCTCGGTTCCATCGTCCTTCGACCTGTCCACTTTAGGCGTTCCAGAAGACGACCAAAAGATGATCAGGGAGCTCATGTCGATCTACGACACCAACATCCAAGGAAACAAAAGCAACGTAAACACCGGTAACAGTGCTATCACGGAGAACCAAAATCTTCCTCAGTTAAAGATACAACCTCAACAAGACGAATACTTTCGCAATCAAGGTATAATGATGGACGGAAACTTCTTCGAGGGATCGAACGTTTCTAGCAGCCAATTCAACCAGTTTAAGCCAATGAATTCACCTTTCGAAAACAACCACCACGAGCACAGCAATAACAACAACAACAACAACAACTTCCACATGATGTTTGGCTCTCCATTTGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGTGCAGCAGCCATCGATACACTGTCGAAACAGCAGGATATTCCATTATGGTATCATTGA 1863 46.54 MMMMFNEMGFCDDMDFLSAPIVDGDVVARPADPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLSKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPNSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHSSFNLGMERTRERVPLRQPPYAIKGEVSTNLDFMRKRKPTSDLNTMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLSCPYRTSSEFNGSSFHVNEVKPVIFPQSFAPPKSAPPPVSSVPSSFDLSTLGVPEDDQKMIRELMSIYDTNIQGNKSNVNTGNSAITENQNLPQLKIQPQQDEYFRNQGIMMDGNFFEGSNVSSSQFNQFKPMNSPFENNHHEHSNNNNNNNNFHMMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYH 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5025672 5027534 + CmaCh10G009730.1 Cma10g00973 302289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00973 620 Gene3D - 81 158 IPR023278 GO:0003700|GO:0005634
Cma10g00973 620 SUPERFAMILY DNA-binding domain of EIN3-like 175 299 IPR023278 GO:0003700|GO:0005634
Cma10g00973 620 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 2 619 IPR006957 GO:0005634
Cma10g00973 620 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
Cma10g00973 620 Coils Coil 48 68 - -
Cma10g00973 620 Gene3D - 173 306 IPR023278 GO:0003700|GO:0005634
Cma10g00973 620 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 2 619 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00807 Cma-Chr4:4140179 Cma10g00973 Cma-Chr10:5025672 2.31E-108 dispersed
Cma04g02492 Cma-Chr4:17074489 Cma10g00973 Cma-Chr10:5025672 0 dispersed
Cma10g00973 Cma-Chr10:5025672 Cma15g00551 Cma-Chr15:2568863 0 dispersed
Cma10g00973 Cma-Chr10:5025672 Cma11g00814 Cma-Chr11:3982932 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35751 PF04873 EIN3 3.80E-129 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00973 K14514 - csv:101206055 1102.04