Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00979 ATGGCCGCCGCCGATACCGCCGACGAGTCGTTGGACCGCCGTCGTGATCAACAAGAGAAATCGTCTGAGGAGCAACCTCATTCCTCGCCTCCGCCGCAGTTGGCTGCTGCTGCTCCTCCTCCTCCTTCCAGAAGAAGGGATAGAGATGAGAGAGATAGGAGAGACGACCGGGATGTTGATCGTCCTCCGAACCGACGCAACGATAATTACGATCGTAATCGCTCTCCGCCTACGCTGCCTCCGAGGGATAGGGATAGAGACAGAGATAGGGATTATAAACGGCGGAACAGTCTTAGTCCCCCACCGCCTTACAGGGATCGTAGACACTCGCCTCCTAGACGGTCTCCGCCACCTTTCAAGCGTTCCCGGAGAGATGATGGGGGTGGGTATGATGGAAGAAAGGGAAGCCCTAGAGGAGGTTTCGGGCCTGGCGATAGGAGGTTTGGTTATGATTATGGTGGGGGATATGAGCGCGAACTGCGAGGCCGGCCTGGATATGTTGATGAAAGGTCTCTTGGTCGGTACATTGGTCGTTCATCTGGTGGCTATCAAGGTGATTGGGATTCTAGTCGTGGTGGGCATGGTGATCCACTCAATGCAGGAGCTGGCCAAAGAGAAGGTTTGATGACATACAAGCAATTTATTCAAGAGCTTGAGGATGATATACTGCCTGCAGAAGCTGAGCCCAGATATCAAGAATACAAGTCTGAGTATATTACAACACAGAAACAATCCTTTTTTGATTCTCATAAGGATGAAGAATGGTTGAAAGACAAATATCATCCTACCAACCTAGTTACTGTCATTGAAAGGAGGAATGAACTTGCACAAAGAACTGCTAAGGATTTTTTGATTGACCTGCAAAGTGGAACACTGGAATTAGGTCCAGGGATCAATGCAGCAGCTACAAATAAATCAGGGCAGACTAGTGAACCAAATTCAGATGATGAAGCAGACAATGATGGCAAACGGAGGCGTCATGGTAGAGGACCAGCAAAAGAAATGGATCTTCTTTCTGCTGCTCCTAAGGCCCACCCTGTTAGCTCTGAACCAAGAAGAATCCAAATTGACATTGAACAAGCTCAATCTCTTGTCCGTAAACTTGATTCTGAGAAAGGAATAGAAGAAAATATTTTATGTGGTTCTGATAGTGACAAACTAGGTCGGGATAAAGCACATGGCGGCTCTTCTGGCCCAGTCATTATCATACGAGGGTTGACAACCGTTAAAGGCTTAGAGGGTGTTGAACTATTAGACACACTTCTCACATATCTGTGGCGCATCCATGGCTTAGATTACTATGGAATGGTTGAGACTAGAGAAGCTAAGGGTCTTCGTCATGTAAGAGAAGAGGGAAAGAACTCTAACATGGCTGGTGGTGCAGATGAATGGGAGAAGAAACTTGATTCGCGTTGGCAAGAGAGATTGAGAGGTCAAGATCCGTTGGAAACGATGACTGCCAAGGATAAAATAGAGGCTGCTGCTCTTGAAGCTTTTGATCCATATGTTCGTAAGATAAGAGATGAGAAATATGGATGGAAGTATGGCTGTGGAGCCAAGGGTTGCACTAAGCTGTTTCATGCTCCTGAGTTTGTGCACAAGCATCTTAACTTGAAACATCCAGAGCTTGTGATGGAGCTGACTTCAAAAGTGCGTGAAGAGCTGTATTTCCAAAATTACATGAATGATGCAGATGCTCCTGGAGGGACGCCTGTTATGCAACAATCGCTTCCGAAGGATAAGCCACAGAGACGTAGGATGAATTTAGATGCTCGGCTGAAGGATGACAGAGGCAATCGCAGGGACCGTGATAATTGGGCGAATGGGGGTGACAGATTTGATAGATCTGAGAATCCACAATCAAATGATTTCCAATCAGCAAATGATGGTTCGGATGGTGGAAACCTTGATGATCCTATGTTTGATACTTTTGGTGGACAAGGAAGGCATGTTGCTCCTTTTGCCTCTGAAATGCCACCACCTGTGCTTATGCCTGTTCCTGGTGCTGGTCCATTAGGACCTTTTGTCCCTGCTCCACCTGAAGTTGCAATGAGAATGTTGCGGGAACAAGGAGGTCCACCTCCATTTGAGGGTGGTGGTAGAAATGGAAGGCCAGGACCTCAATTAGGTGGATCTGCTCCAATTCTTGCCCTATCTCCAGGTTTTCGACAGGATCCTCGTCGAATACGGAGTTATCAAGACCTAGATGCCCCTGAGGACGAAGTCACTGTAATAGATTATAGAAGCTTATATATTTGGTATCGGCGAGTGTTTAGAGGCCTGCTCGTGTTTCCAAGGGGGGATGCAACTCCGGAACTG 2319 47.3 MAAADTADESLDRRRDQQEKSSEEQPHSSPPPQLAAAAPPPPSRRRDRDERDRRDDRDVDRPPNRRNDNYDRNRSPPTLPPRDRDRDRDRDYKRRNSLSPPPPYRDRRHSPPRRSPPPFKRSRRDDGGGYDGRKGSPRGGFGPGDRRFGYDYGGGYERELRGRPGYVDERSLGRYIGRSSGGYQGDWDSSRGGHGDPLNAGAGQREGLMTYKQFIQELEDDILPAEAEPRYQEYKSEYITTQKQSFFDSHKDEEWLKDKYHPTNLVTVIERRNELAQRTAKDFLIDLQSGTLELGPGINAAATNKSGQTSEPNSDDEADNDGKRRRHGRGPAKEMDLLSAAPKAHPVSSEPRRIQIDIEQAQSLVRKLDSEKGIEENILCGSDSDKLGRDKAHGGSSGPVIIIRGLTTVKGLEGVELLDTLLTYLWRIHGLDYYGMVETREAKGLRHVREEGKNSNMAGGADEWEKKLDSRWQERLRGQDPLETMTAKDKIEAAALEAFDPYVRKIRDEKYGWKYGCGAKGCTKLFHAPEFVHKHLNLKHPELVMELTSKVREELYFQNYMNDADAPGGTPVMQQSLPKDKPQRRRMNLDARLKDDRGNRRDRDNWANGGDRFDRSENPQSNDFQSANDGSDGGNLDDPMFDTFGGQGRHVAPFASEMPPPVLMPVPGAGPLGPFVPAPPEVAMRMLREQGGPPPFEGGGRNGRPGPQLGGSAPILALSPGFRQDPRRIRSYQDLDAPEDEVTVIDYRSLYIWYRRVFRGLLVFPRGDATPEL 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5064998 5072086 + CmaCh10G009790.1 Cma10g00979 302295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00979 773 MobiDBLite consensus disorder prediction 1 202 - -
Cma10g00979 773 PANTHER SERRATE RNA EFFECTOR MOLECULE-LIKE PROTEIN 43 750 - -
Cma10g00979 773 MobiDBLite consensus disorder prediction 7 23 - -
Cma10g00979 773 MobiDBLite consensus disorder prediction 316 333 - -
Cma10g00979 773 PANTHER ARSENITE-RESISTANCE PROTEIN 2 43 750 IPR039727 GO:0006397
Cma10g00979 773 Pfam SERRATE/Ars2, N-terminal domain 212 293 IPR021933 -
Cma10g00979 773 MobiDBLite consensus disorder prediction 579 611 - -
Cma10g00979 773 Pfam Arsenite-resistance protein 2 451 653 IPR007042 -
Cma10g00979 773 MobiDBLite consensus disorder prediction 42 132 - -
Cma10g00979 773 MobiDBLite consensus disorder prediction 562 645 - -
Cma10g00979 773 ProSitePatterns Zinc finger C2H2 type domain signature. 517 540 IPR013087 -
Cma10g00979 773 MobiDBLite consensus disorder prediction 151 168 - -
Cma10g00979 773 MobiDBLite consensus disorder prediction 296 354 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00979 Cma11g00810 CCT
Cma10g00979 Cma11g00810 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00979 Cma-Chr10:5064998 Cma11g00810 Cma-Chr11:3953212 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00979 - - cmax:111485005 1231.47