Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00980 ATGGATGAAATGGTTCGGGTTGATGGGTTGGCTCATCCTGCAGTTGTAGATGATAGTGATGTTGACCCTCATGAAGGTGAAATCAACACTGCTGAAGATTCTGCATTTCATGATGAAGATGGAATTATCGAACCGTATGAAGGCATGGAATTTGAATCCGAAGGCGATGCAAAGACCCTCTATGATGAGTATGCTCGACGCATTGGTTTTAGTTCAAAACTTGGACAACTTAGTCGTTCTAAATCCGATGGAATTATAATTAGTAGAGAATTTGTATGTGCTAGAGAGTGTTCAGAAAGAAAACCTGCTGGTAGTTGTGATGCAATGCTTAGGATAGAATTGAAAGATCAGGATAAATGGGTTGTCACAAAGTTTGTAAAAGAGCATAGTCATTCTACAGTCAATTCTAGTAAGGTGCATTATATACGGCCACGCAGGCATTTCGCTGGTGCTGCAAAGACCATGACTGAAGCTTACACTGGTTCAGCAGGTGTTCCCAGTGGTGTCATGTCTGTATTAATGGACGACAACCGAGCACCTGCAGGTAAAACTCGTGGAGGTTGGAAGACATCTCAAGCAGAAGCTAATCGGTCACTTAATAATGCTTCAACTATGAATTATCCCATTAGGAATGCTGGCCAAAAGAGGACACTGGGGAGGGATGCTCAGAATATGCTGGAATATTTTAAGAAAATGCAATCTGAGAATCCTGGATTTTTTTATGCAATACAACTTGATGAAGATAATCGTATGGCTAATGTATTTTGGGCCGATGCAAGGTCTCGAGCAGCTTACAGTCATTTTGGTGATGCAGTTACATTGGACACGATGTACAGAGTTAACCAGTTCAGAGTTCCCTTTGCACCATTCACTGGAGTGAACCATCATGGTCAGACAATTTTGTTTGGATGTGCTTTACTTCTTGATGAATCTGAGGCTTCTTTTGTTTGGTTGTTCAAAACATTTCTAACAGCAATGAATAATCGTCAGCCTGTTTCAGTTACCACGGATCAAGACAGAGCCATACATGTAGCTATTGCTCAAGTGTTTCCCGACGCCCGACACTGCATTAGCAAATGGCACGTGTTAAGAGAAGGTCAGCAGAAGTTAGCTCATGTATGTCTCACATATCCGAATTTTCAAGTCGAACTTTACAATTGTATCAACTTGACTGAAACTATTGAGGAATTTGAGTCTGCCTGGAATTGTATCATTGAAAAGTATAATTTAGGACGAAGTGATTGGCTCCAATCATTATATAACGCACGCGCTCAGTGGGTACCCGTGTATGTCCGTGATTCATTTTTTGCTGTTATATCTCCCAATCAAGGGTATGATAATTCCTTTTTTGATGGATATGTGAATCAGCAGACCACATTACCATTGTTCTTTAGGCAGTATGAAACAGCTTTAGAAAATTGGTTTGAAAAGGAAATAGAAGCAGACTTTGACACAATGTGCACTACACCTGTATTGAGGACACCATCTCCTATGGAGAAGCAAGCAGCAAATCTTTATACGAGAAAAATATTTGCAAAATTTCAAGAAGAGCTTGTTGAAACTTTTGTCTATACTGCAAATCGAATCGAAGGTGATGCAACTCTTGGCACTTTTCGGGTTGCTAAATTTGAGGATGACCAGAAGGCATATGTTGTCACGTTAAATTATCCAGACATGAGAGCTAATTGTAGCTGTCAAATGTTCGAGTATTCCGGCATTCTTTGCAGACATGTATTAACCGTCTTCACAGTAACTAATGTACTTACCTTACCATCTCATTTCATTTTGAGAAGATGGACAAGGAATGCAAGGAATGGACTTGGATCAGATGAACGTGCTATTGAGTTACACGGCCAGGAGTCTTTATCGTCAAGGTACAATAATTTATGCCGAGAAGCAATCAGGTACGCAGAGGAAGGTGCAACTGCTCCAGAAACTTATAATCTTGCCATGACTGCACTAAAAGAAGCTGGGAAAGAAGTAGCAACTGTCAAAAAGAATATTGCAAAAGTTGCACCTCCTAGCTCTCAGGTCAGTGGGGGGGCTGGGTATGATGAGAGGAAGACCTCAGCTTCAGCATCAGATACAACTCCACTGTTGTGGCCTCGTCAAGATGAAGTAATGAGGCGATTTAATCTTAACGATGCTGGTGCTCATGTCCAATCCATTGCTGATTTGAATTACCCGCATATAGCTCCTGTCTCCCTTCACCGAGATGACAATCCTCCCGACCATGTGGCTGTTCTTCCTTATTTGAAATCAATGACTTGGGTGATGGAGAATAAAAATTCAACCACAGGAAATAGAGTTGCTGTTATCAACTTGAAGCTGCAAGACTACAGTAAGAGTCCGTCTGCAGAATCGGAAGTTAAGTTTCAGCTCTCGAGGGTTTCACTGGAACCAATGTTGAGGTCTATGGCATACATCAGCGAACAGCTCTCGACACCAGCGAACAAAGTGGCTGTCATCAACTTGAAGCTTCAAGATACGGAGACAACTTCGGGAGAGTCTGAGGTTAAGTTTCAGGTCTCTAGAGATACATTGGGTGCAATGTTGAGGTCAATGGCCTACATTCGTGAGCAGCTTTCAAATGCTGCTGAGTCAGAACCTCTTCCAAAAAAGCAAAGGAAGTAA 2634 41.65 MDEMVRVDGLAHPAVVDDSDVDPHEGEINTAEDSAFHDEDGIIEPYEGMEFESEGDAKTLYDEYARRIGFSSKLGQLSRSKSDGIIISREFVCARECSERKPAGSCDAMLRIELKDQDKWVVTKFVKEHSHSTVNSSKVHYIRPRRHFAGAAKTMTEAYTGSAGVPSGVMSVLMDDNRAPAGKTRGGWKTSQAEANRSLNNASTMNYPIRNAGQKRTLGRDAQNMLEYFKKMQSENPGFFYAIQLDEDNRMANVFWADARSRAAYSHFGDAVTLDTMYRVNQFRVPFAPFTGVNHHGQTILFGCALLLDESEASFVWLFKTFLTAMNNRQPVSVTTDQDRAIHVAIAQVFPDARHCISKWHVLREGQQKLAHVCLTYPNFQVELYNCINLTETIEEFESAWNCIIEKYNLGRSDWLQSLYNARAQWVPVYVRDSFFAVISPNQGYDNSFFDGYVNQQTTLPLFFRQYETALENWFEKEIEADFDTMCTTPVLRTPSPMEKQAANLYTRKIFAKFQEELVETFVYTANRIEGDATLGTFRVAKFEDDQKAYVVTLNYPDMRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHFILRRWTRNARNGLGSDERAIELHGQESLSSRYNNLCREAIRYAEEGATAPETYNLAMTALKEAGKEVATVKKNIAKVAPPSSQVSGGAGYDERKTSASASDTTPLLWPRQDEVMRRFNLNDAGAHVQSIADLNYPHIAPVSLHRDDNPPDHVAVLPYLKSMTWVMENKNSTTGNRVAVINLKLQDYSKSPSAESEVKFQLSRVSLEPMLRSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSNAAESEPLPKKQRK 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5074472 5080570 - CmaCh10G009800.1 Cma10g00980 302296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00980 877 MobiDBLite consensus disorder prediction 675 697 - -
Cma10g00980 877 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 36 804 - -
Cma10g00980 877 Pfam FAR1 DNA-binding domain 60 133 IPR004330 -
Cma10g00980 877 Pfam SWIM zinc finger 551 584 IPR007527 GO:0008270
Cma10g00980 877 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 804 IPR031052 GO:0006355
Cma10g00980 877 Pfam MULE transposase domain 272 363 IPR018289 -
Cma10g00980 877 SMART 26again6 561 588 IPR006564 GO:0008270
Cma10g00980 877 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00980 Cma20g00138 CCT
Cma10g00980 Cma20g00138 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01444 Cma-Chr6:9258615 Cma10g00980 Cma-Chr10:5074472 6.99E-18 dispersed
Cma10g00980 Cma-Chr10:5074472 Cma19g00822 Cma-Chr19:7848454 0 dispersed
Cma10g00980 Cma-Chr10:5074472 Cma11g00808 Cma-Chr11:3947589 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35752 PF10551 MULE 7.50E-24 CL0219 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00980 - - csv:101219730 1656.34