Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma10g01008 | ATGGAAGATTCCTCCAAGTCAGGTGATGATCGGAAGAATACCCGTTTCTACCACCCTTACCAAGACCTACACGTTCCGATCACAAAGCTCTACGAGCTTCCCACCGCCCCCGAGCATCTTTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTATACTGGAATTGGCTACCTCTCCGGCGCCCTTCTCGGCGGCGCCAGAGGCTCTATTCAGGGTCTTAGAGCGGCAGAGCCTGGCGACTCTGTGAAGCTCCGTCTCAATCGAGTTCTCAATTCTGGGGGCCAGCTTGGTCGGAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATCCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCACTTTACAAGGCGGCTTCCGGGCCGAGGTCAGCCGCTATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG | 555 | 54.77 | MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI | 184 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 5260986 | 5261540 | + | CmaCh10G010080.1 | Cma10g01008 | 302324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma10g01008 | 184 | Pfam | Tim17/Tim22/Tim23/Pmp24 family | 58 | 166 | - | - | |
| Cma10g01008 | 184 | PANTHER | TIM23 | 6 | 184 | IPR045238 | GO:0022857 | |
| Cma10g01008 | 184 | PANTHER | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-3 | 6 | 184 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma08g00784 | Cma-Chr8:4723282 | Cma10g01008 | Cma-Chr10:5260986 | 2.20E-59 | dispersed | |
| Cma10g01008 | Cma-Chr10:5260986 | Cma11g00986 | Cma-Chr11:5246207 | 1.92E-102 | dispersed | |
| Cma10g01008 | Cma-Chr10:5260986 | Cma17g00711 | Cma-Chr17:5874218 | 2.97E-71 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma10g01008 | K17794 | - | csv:116401801 | 305.834 |