Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01008 ATGGAAGATTCCTCCAAGTCAGGTGATGATCGGAAGAATACCCGTTTCTACCACCCTTACCAAGACCTACACGTTCCGATCACAAAGCTCTACGAGCTTCCCACCGCCCCCGAGCATCTTTTCTTCGAAGAGGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAATCTCCAGTACTATACTGGAATTGGCTACCTCTCCGGCGCCCTTCTCGGCGGCGCCAGAGGCTCTATTCAGGGTCTTAGAGCGGCAGAGCCTGGCGACTCTGTGAAGCTCCGTCTCAATCGAGTTCTCAATTCTGGGGGCCAGCTTGGTCGGAGGGCTGGGAACTCTCTTGGGATTCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATCCATTTGAGAGGTACTGATGATGTTTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCACTTTACAAGGCGGCTTCCGGGCCGAGGTCAGCCGCTATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGCGGGAAAGCAGGCAGTTAAGAGATATGTGCCGATATAG 555 54.77 MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTGIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGLESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRYVPI 184
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 5260986 5261540 + CmaCh10G010080.1 Cma10g01008 302324
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01008 184 Pfam Tim17/Tim22/Tim23/Pmp24 family 58 166 - -
Cma10g01008 184 PANTHER TIM23 6 184 IPR045238 GO:0022857
Cma10g01008 184 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-3 6 184 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00784 Cma-Chr8:4723282 Cma10g01008 Cma-Chr10:5260986 2.20E-59 dispersed
Cma10g01008 Cma-Chr10:5260986 Cma11g00986 Cma-Chr11:5246207 1.92E-102 dispersed
Cma10g01008 Cma-Chr10:5260986 Cma17g00711 Cma-Chr17:5874218 2.97E-71 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01008 K17794 - csv:116401801 305.834