Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01018 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTGGACCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGCTATGAGAAACTTCTTGATGCTGCTTGTGTTAAGGACGAGAATTACGAACCAGGAGATGACCCACGGAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCAGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAACTTGAAGAGGCTAGGAGGCTTGCTTCGCTTCAAAAAAGGAGGGAGCTAAAAGCTGCTGGGATTGATACTCGACATCGGAAAAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTCGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGGGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAGCAACAATTGAAGAGCTTGAAGGCAAAAGAAGGATTGATGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCTGGTGATCTTCTTGCTGGTAATGAAGAGCTTGCCGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCCCAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAGAGGACACCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGCTCACACCCTCAGCAACTCCTGGTGGTGTTGGTCTTACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGTATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTCGGAAAAGATCTAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCCTTGGAACTTATTAGAAATTCCTTGATCGCTGATGGAGACAAGAGTTCATTTGTACCACGTACCCCTATTGAGCAGGCTGATGAAATGGTAAGAAAGGAACTTCTTGCTCTGCTAGAGCATGATAATGCGAAGTACCCGATCGATGAAAAGGTCAACAAGGAGAAGAAGAAAGGTTCCAAGCGCTCTGGAAATAGACCTACTGCAGCCATCCCCACAATAGATGATTTTGAAGTAACTGAGATGGAAGAGGCTGATTATTTGATAAATGAAGAGGCCCGGTATTTGTGTGTTGCAATGGGGCATGAAAAGGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCTAGTGTTGCTGGAAACCACGAGAAGCTAGCCGCCTTGCAGGATGAGTTTGAGTATGTTAAAATGAAAATGGATGACGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGATATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACGTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGTGGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCGCACAGGATTAGTGGTATCTCAGAGGAGGTTCAGAAGCAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAATCTTTTGGCGGAGTTGGAAAAGATGCAGAAAATCATGGATGATCGCAAGGCACTGGCACAAAAGGAGGAAGAAATCGCAGCGGAGAGTCGCGCTCTTCAGTTGGCTGAGGCTGAGGCTGAGGCTAATCAATCCGTAGGAGAAAAAGCTGATAATAGTTATGAATCCATGTCTGCATCAGCAGTAGTCAATTGTGAAAACTCTATGCCCGTTACCTCAGCCCCCAATGAATTAACGGGCGAGCAACTGAACTTGTCCGTGAGACATGAACATGGCACATCTAATGCCATGGATATCGATGCAGAGAAAGAAAGTGCAGTGGTGAGCTCAGATATTGGCTTAACTGATGACAAACTACCTTCTGCAGTGGAAGAGAATGCATCACTGCCTGACAATGGCTTTGAAGATTCTGATAAAAGTCGAACCATTGATGTTCCTTCTCAAGAACTCTTGGGCCCTCATGCAAATGGCTCTCCAGACTCTATTACCGCGGAAAATAAGATCAGCAATGAGTCAGTTGATGGAGCAGCTATTCAAAATGTAGAGTGTAGTACCAATAATGTGGAGGAAGTCGAAGATGTTGAAACGCAGCAGCTTAACACTGAAGCTGAAAACTCAGAGTTTCATTTGACTAATCTCGATTCTTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTCGTAACGAAGGGGAAGCAACGGAATAG 3084 45.01 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSGEDRPVEQPKFPATIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYAGDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLIADGDKSSFVPRTPIEQADEMVRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNRPTAAIPTIDDFEVTEMEEADYLINEEARYLCVAMGHEKESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKMKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFVALQKQEMSAASHRISGISEEVQKQKELERTLQLRYGNLLAELEKMQKIMDDRKALAQKEEEIAAESRALQLAEAEAEANQSVGEKADNSYESMSASAVVNCENSMPVTSAPNELTGEQLNLSVRHEHGTSNAMDIDAEKESAVVSSDIGLTDDKLPSAVEENASLPDNGFEDSDKSRTIDVPSQELLGPHANGSPDSITAENKISNESVDGAAIQNVECSTNNVEEVEDVETQQLNTEAENSEFHLTNLDSSAAPASSNEDGPRNEGEATE 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5439947 5453214 - CmaCh10G010180.1 Cma10g01018 302334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01018 1027 Coils Coil 795 831 - -
Cma10g01018 1027 CDD SANT_CDC5_II 55 106 - -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 157 176 - -
Cma10g01018 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 598 618 - -
Cma10g01018 1027 Gene3D - 5 59 - -
Cma10g01018 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 991 1015 - -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 382 421 - -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 991 1027 - -
Cma10g01018 1027 Coils Coil 167 187 - -
Cma10g01018 1027 SMART sant 6 55 IPR001005 -
Cma10g01018 1027 SMART sant 58 105 IPR001005 -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 113 150 - -
Cma10g01018 1027 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 896 - -
Cma10g01018 1027 Pfam Myb-like DNA-binding domain 10 70 - -
Cma10g01018 1027 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cma10g01018 1027 Gene3D - 60 114 - -
Cma10g01018 1027 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cma10g01018 1027 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 400 414 - -
Cma10g01018 1027 CDD SANT 10 53 IPR001005 -
Cma10g01018 1027 PANTHER - 1 896 - -
Cma10g01018 1027 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01018 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101206265 1671.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01018 Cma-Chr10:5439947 Cma05g00602 Cma-Chr5:3011623 9.35E-11 dispersed
Cma10g01018 Cma-Chr10:5439947 Cma11g00972 Cma-Chr11:5168264 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g00972 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Cma10g01018 . 1 853 MYB-Related Transcription Factor Family AT1G09770 76.0 0.0e+00 1199.1
Cma10g00321 CST 165 631 MYB-Related Transcription Factor Family AT3G18100 55.6 8.9e-148 521.5
Cma10g00321 CST 165 631 MYB-Related Transcription Factor Family AT3G18100 55.6 8.9e-148 521.5
Cma11g00972 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Cma10g01018 . 1 853 MYB-Related Transcription Factor Family AT1G09770 76.0 0.0e+00 1199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35755 PF11831 Myb_Cef 8.70E-58 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g01018 Cma_Chr10 FPKM 9.753985 11.18025 11.487231 11.381846 13.707115 13.489109 13.064351 28.907766 24.520769 24.929979