Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01018 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTGGACCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGCTATGAGAAACTTCTTGATGCTGCTTGTGTTAAGGACGAGAATTACGAACCAGGAGATGACCCACGGAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCAGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAACTTGAAGAGGCTAGGAGGCTTGCTTCGCTTCAAAAAAGGAGGGAGCTAAAAGCTGCTGGGATTGATACTCGACATCGGAAAAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTCGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGGGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAGCAACAATTGAAGAGCTTGAAGGCAAAAGAAGGATTGATGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCTGGTGATCTTCTTGCTGGTAATGAAGAGCTTGCCGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCCCAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAGAGGACACCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGCTCACACCCTCAGCAACTCCTGGTGGTGTTGGTCTTACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGTATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTCGGAAAAGATCTAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCCTTGGAACTTATTAGAAATTCCTTGATCGCTGATGGAGACAAGAGTTCATTTGTACCACGTACCCCTATTGAGCAGGCTGATGAAATGGTAAGAAAGGAACTTCTTGCTCTGCTAGAGCATGATAATGCGAAGTACCCGATCGATGAAAAGGTCAACAAGGAGAAGAAGAAAGGTTCCAAGCGCTCTGGAAATAGACCTACTGCAGCCATCCCCACAATAGATGATTTTGAAGTAACTGAGATGGAAGAGGCTGATTATTTGATAAATGAAGAGGCCCGGTATTTGTGTGTTGCAATGGGGCATGAAAAGGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCTAGTGTTGCTGGAAACCACGAGAAGCTAGCCGCCTTGCAGGATGAGTTTGAGTATGTTAAAATGAAAATGGATGACGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGATATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACGTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGTGGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCGCACAGGATTAGTGGTATCTCAGAGGAGGTTCAGAAGCAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAATCTTTTGGCGGAGTTGGAAAAGATGCAGAAAATCATGGATGATCGCAAGGCACTGGCACAAAAGGAGGAAGAAATCGCAGCGGAGAGTCGCGCTCTTCAGTTGGCTGAGGCTGAGGCTGAGGCTAATCAATCCGTAGGAGAAAAAGCTGATAATAGTTATGAATCCATGTCTGCATCAGCAGTAGTCAATTGTGAAAACTCTATGCCCGTTACCTCAGCCCCCAATGAATTAACGGGCGAGCAACTGAACTTGTCCGTGAGACATGAACATGGCACATCTAATGCCATGGATATCGATGCAGAGAAAGAAAGTGCAGTGGTGAGCTCAGATATTGGCTTAACTGATGACAAACTACCTTCTGCAGTGGAAGAGAATGCATCACTGCCTGACAATGGCTTTGAAGATTCTGATAAAAGTCGAACCATTGATGTTCCTTCTCAAGAACTCTTGGGCCCTCATGCAAATGGCTCTCCAGACTCTATTACCGCGGAAAATAAGATCAGCAATGAGTCAGTTGATGGAGCAGCTATTCAAAATGTAGAGTGTAGTACCAATAATGTGGAGGAAGTCGAAGATGTTGAAACGCAGCAGCTTAACACTGAAGCTGAAAACTCAGAGTTTCATTTGACTAATCTCGATTCTTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTCGTAACGAAGGGGAAGCAACGGAATAG 3084 45.01 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSGEDRPVEQPKFPATIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYAGDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLIADGDKSSFVPRTPIEQADEMVRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNRPTAAIPTIDDFEVTEMEEADYLINEEARYLCVAMGHEKESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKMKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFVALQKQEMSAASHRISGISEEVQKQKELERTLQLRYGNLLAELEKMQKIMDDRKALAQKEEEIAAESRALQLAEAEAEANQSVGEKADNSYESMSASAVVNCENSMPVTSAPNELTGEQLNLSVRHEHGTSNAMDIDAEKESAVVSSDIGLTDDKLPSAVEENASLPDNGFEDSDKSRTIDVPSQELLGPHANGSPDSITAENKISNESVDGAAIQNVECSTNNVEEVEDVETQQLNTEAENSEFHLTNLDSSAAPASSNEDGPRNEGEATE 1027
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5439947 5453214 - CmaCh10G010180.1 Cma10g01018 302334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01018 1027 Coils Coil 795 831 - -
Cma10g01018 1027 CDD SANT_CDC5_II 55 106 - -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 157 176 - -
Cma10g01018 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 598 618 - -
Cma10g01018 1027 Gene3D - 5 59 - -
Cma10g01018 1027 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 991 1015 - -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 382 421 - -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 991 1027 - -
Cma10g01018 1027 Coils Coil 167 187 - -
Cma10g01018 1027 SMART sant 6 55 IPR001005 -
Cma10g01018 1027 SMART sant 58 105 IPR001005 -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 113 150 - -
Cma10g01018 1027 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 896 - -
Cma10g01018 1027 Pfam Myb-like DNA-binding domain 10 70 - -
Cma10g01018 1027 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cma10g01018 1027 Gene3D - 60 114 - -
Cma10g01018 1027 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cma10g01018 1027 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cma10g01018 1027 MobiDBLite consensus disorder prediction 400 414 - -
Cma10g01018 1027 CDD SANT 10 53 IPR001005 -
Cma10g01018 1027 PANTHER - 1 896 - -
Cma10g01018 1027 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01018 Cma-Chr10:5439947 Cma05g00602 Cma-Chr5:3011623 9.35E-11 dispersed
Cma10g01018 Cma-Chr10:5439947 Cma11g00972 Cma-Chr11:5168264 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35755 PF11831 Myb_Cef 8.70E-58 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01018 K12860 - csv:101206265 1671.75