Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01045 ATGCGTAAAGCCTGCGGTAGCAACGGAACAGGGGAAAGACTTGGCTACGGGGAAGATGATTGGCTCGGAACAGGAACAGATCTTGTTGTGTTCTTCATTGTTATGGAGTCGATGAACTCATCTTCCCCTGTTGGATCGAACTTGGATTCCTTTAATGGCGTCCCTCCATCTTTGTTGTGTACAGATGTGAGTGTTGTACCTGAGCATCAAAACACTGAGCTCCAGAAATCAATACTCAATCTAGAAGGTGAGATTGAACAATTGAGATTGAAGTTGAGCATGTCAAACGAGAAGCGTAGAGACGCGTTGAATAAGATTCTAGACATTAAAGGTAGTATTCGTGTGTTTTGTCGTGTTCGTCCGTTTTTACTGACGGATCGGAGAAGAATTTGTGAGCCCATTTTGTTGGAACGAGATAAGGTCAAGGTTCGATCGCCGGGAACTAGAAAGGAATTCGAATTCGATAAGGTTTTTTGTAAAGAAGCATCCCAAGAGGAAGTCTATTCTGAGGTCGAACCGATAATCCAATCCGCTCTTGATGGTCGAAACGTATGTATAATAGCTTACGGTCAAACGGGCACGGGCAAGACATATACCATGGATGGTAGAATGGAGGAGCCGGGAATAGTCCCCCGTGCGCTTGAGATGCTCTTTCAAACGTCCATCGGCGCCTCGTCGACTGCAACGTTTTCCATGAGTATGTTGGAGGTTTACATGGGTAGTCTCAGAGACCTGCTGGCTCCAAAAGCAGGCTCAAGAATGTATGAACGATGCAATCTCAACATTCAAACAGATCAAAAGGGATTCGTTGAGATCGAGGGCCTAACCGAAGTCCCGATTCCCGACTTTGAAAAGGCTAAATGGTGGTATAATAAAGGAAGACGGGTTCGATCTACTTCGTGGACTAATGTGAACGAAACATCTAGCCGATCACACTGCTTAACAAAGGTCACCATGTATCGTTGCGTGAACGGTTCAAAAGCTAAAACCGAAGTAAGCAAACTATGGATGGTGGATTTGGGAGGAAGTGAAAGATTGTTGAAAACCGGGGCATGTGGTCTAACGCTCGACGAGGGAAGAGCGATAAATCTTTCTCTTTCGGCTTTGGGAGATGTCATTGCAGCTCTAAGGAGGAAGAGGGGTCATGTTCCTTACAGAAATAGCAAGCTAACTCAAATACTCAAAGATTCCTTAGGTGACGGTTCAAAGGTGTTAATGCTTGTGCATTTAAGTCCTTGTGAAGAAGATGTTGCAGAGACGATATGCTCATTAAGTTTTGCAAAGAGAGCACGAGCGATCGAAACGAGTCGAGAATTACAGGAGGACTCGAAGAAGCAAAGAGAGAAAAAAATTGTAGTGCTGGATGAAACCATGAAGGAAGCTCAGGAGGAATGCCAAAAACTCAAGAACCAAATACAGAAAGCCGAGTTTCTATTAAGTGAAAACAAGAAGCGATTTTCTACCGAGCATCATCCATGTGTCGAAACTTCAAAGACGAACCATATAGCGCTCGGGGAAGATCAGAAGGAAGTCATTGTCACTCCAAGAAAGCCTAAAGTTTCAAGTAAAAGTATAGTTTCGAATTCTTTGCCTCGTTTCATGACGTCGACAATGGCGAGTCGACAAAGACAAAGTTCTGCAGAAAATAAAGTGGCGACAGGGAGAGCAAAAAGTTCGAGATTTGGAACAAGAAGCTCTGTCCAATTCTCAAGTTCCCAGTCAATAAGTTACTCAGATTTTCGTATACGAGCAAGTTTACACATATCAAATAAGAAGTCGAGGTATGTCGAACCCGACACCCTCTCAACAGAAGCTCCTCAAGTGAACGTCCCAGAACTAAAGAAAGATTCATTGCCATTGCCATGGCCGCAAAGCAAATTGGTAACTTCATCTGATTCGAACTTGAAAGTTACGGTTTCTCGTCACCGGAGAAGGATGTCTGATCTCATCTAA 1953 43.88 MRKACGSNGTGERLGYGEDDWLGTGTDLVVFFIVMESMNSSSPVGSNLDSFNGVPPSLLCTDVSVVPEHQNTELQKSILNLEGEIEQLRLKLSMSNEKRRDALNKILDIKGSIRVFCRVRPFLLTDRRRICEPILLERDKVKVRSPGTRKEFEFDKVFCKEASQEEVYSEVEPIIQSALDGRNVCIIAYGQTGTGKTYTMDGRMEEPGIVPRALEMLFQTSIGASSTATFSMSMLEVYMGSLRDLLAPKAGSRMYERCNLNIQTDQKGFVEIEGLTEVPIPDFEKAKWWYNKGRRVRSTSWTNVNETSSRSHCLTKVTMYRCVNGSKAKTEVSKLWMVDLGGSERLLKTGACGLTLDEGRAINLSLSALGDVIAALRRKRGHVPYRNSKLTQILKDSLGDGSKVLMLVHLSPCEEDVAETICSLSFAKRARAIETSRELQEDSKKQREKKIVVLDETMKEAQEECQKLKNQIQKAEFLLSENKKRFSTEHHPCVETSKTNHIALGEDQKEVIVTPRKPKVSSKSIVSNSLPRFMTSTMASRQRQSSAENKVATGRAKSSRFGTRSSVQFSSSQSISYSDFRIRASLHISNKKSRYVEPDTLSTEAPQVNVPELKKDSLPLPWPQSKLVTSSDSNLKVTVSRHRRRMSDLI 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5812571 5821848 - CmaCh10G010450.1 Cma10g01045 302361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01045 650 Pfam Kinesin motor domain 139 433 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g01045 650 Coils Coil 71 105 - -
Cma10g01045 650 MobiDBLite consensus disorder prediction 531 565 - -
Cma10g01045 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 476 IPR027417 -
Cma10g01045 650 Gene3D Kinesin motor domain 59 436 IPR036961 -
Cma10g01045 650 PANTHER KINESIN-LIKE PROTEIN KLP-3 36 645 - -
Cma10g01045 650 SMART kinesin_4 110 441 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g01045 650 Coils Coil 444 485 - -
Cma10g01045 650 ProSiteProfiles Kinesin motor domain profile. 112 433 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g01045 650 PANTHER KINESIN-LIKE PROTEIN KIN-14D ISOFORM X1 36 645 - -
Cma10g01045 650 PRINTS Kinesin heavy chain signature 383 404 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g01045 650 PRINTS Kinesin heavy chain signature 181 202 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g01045 650 PRINTS Kinesin heavy chain signature 334 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma10g01045 650 PRINTS Kinesin heavy chain signature 302 319 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01045 - - - bhj:120071271 1046.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01045 Cma-Chr10:5812571 Cma12g01072 Cma-Chr12:8475904 8.11E-79 dispersed
Cma10g01045 Cma-Chr10:5812571 Cma05g01136 Cma-Chr5:8883021 3.16E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g6 . . . . . . . . Cmo10g01101 . Cma10g01045 . . . . . Cpe18g00084 . . . . . . . . . . . . . . . . . . . . . . . Blo14g00340 . . Bpe08g00334 . Bma07g00328 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008630 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 2 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g01045 Cma_Chr10 FPKM 20.305677 22.118294 24.707493 27.428801 24.425045 23.584082 24.962893 21.621527 20.493065 20.106054