Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01052 ATGAAACACATTTTCAAGAAGTTTCATATCGGAAGCAATCACGATCCGAGTCGATCCAACGAGAATCCGTTGCCTGTAGCAGCGTCGTTGTCGTCGTCGTTGTCGTCGTCGTCTCCATGTGTTTCTGATAATCGTCCTGCAACTGCTCCCGGCCTCACTTCTGGCAACTCTCCATTGAGTCCTTCGTCTTCGCCGTCGCTGGCAACAACTCCTCCAGGCGGCGGAAGCGTGACTCCGGTTTCGGTTGCTCCCAATCGGTCCGATTACTTTTCTTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCCTCCAATTCGGACTTTCGGGATGATCCGGAGAAAGATCAAATTCGTGCTGCGTCGCTTTTGAGCTTCGGAAATCATCGAATTGAATCCACTGCCAGAGACCAGGGAGATGCTGCCGAGGTGCTCTCCAGACAATATTGGGAATACAATCTGCTTGGCTATGAAGATAAAGTGGTCAATGGGTTTTATGATGTCCTCTCCACGGATTCAGCAGTCCAAGGAAAAATTCCATCTCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTCGTGATGGTCAATATGACTGTTGATCATGCATTAGAAGAGCTTGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGTACTGAGGTAAGGGTTCAAAGGCTTGCTGAGCTTGTTATGGGACATATGGGCGGACCTGTAAAGGACGCCCATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTGAGGACTTCTCTTAACACCAGTGTATTGCCTATTGGTTCCATCAATATTGGCCTCTCAAGGCATCGTGCATTGCTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACAGGTGTCGAAGAAGATGCTGTGAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTATACCAGCAGACATATTAAGTGCAAAGGATACTACTTCCATTAAGCCTTACAACCCTAAAGTAAGCAAAATTCCTTCTCCTCACCACTATAATGATGCTGGAATTTCTTCTGCGAAGCCAACATTATTACTTGAGGAAGGCAGCAGTCAAAACTTTGAAGCAGAGGCCAGCTCACTGGTGGATGAAAAACTGAGCTATGGAAGGACAGAGTCTGTGCCGTCAAGCTCAGGTATTGAGACTTCTCGATACAAAGGGGCCCATTTTGGTGATAGTAATGTTAGACTGAATGTCAATGTAGTTTCACTTGGTCAAAGCTCCGAGGATTCCAAAAATCTTTTTGAAGATCTTAATCCTTTCCAAATAAAAGGAACTGGAAAAAGTTTCATTCTTAACAAATCCTCTGACAATAAAATTGAGGAGCTTCGGAAACCTGCTATTGGGCATGCTCCTGTGCCGTTATGGAAAAACCGGGTTGTTTTCAATGCAGTTCCCAAGAATAAAGAGTATGATTATATGGAGGGCCGTTTTCCAAGAACTAATTGTAGACCTAATGATCATAATACAGCATCGTCTTTTTCTGCAAGCTCTTCTGTCTCTGAAAATGTTAATCCTAGTGGTTCAGGAATATCCATTGACTCGAGGGTACCGAATAGAAGTGCTGAATTTGGAAGTTCTTCATCTAATATGAACTCACGGTTGGCATCCACAATGATAGAGCCTAATATTTTGCCTTTGAAGCAGAACAGAAAGCTCAATGGAGAATATTCTGGAAATATAGACATGCAGGACGAAAAGGTGGATGCCGTTGTTGGACGTGAGAATTTAAGCAGATTTGATAACCGTAGAAAGTTCACATTTGATAGATCTGTTGGGACTAATTTGATATTGAAGGATCCGGGAAGTCCCAGCATATTGATTGATCCAAGTTCGAGGAGTAGGTTTGAGCAAGTTTATGATGACGTGGATGTAGGCCAATGTGAAATCCAATGGGAGGACCTCGTTATTGGGGAAAGGATTGGACTAGGTTCATATGGAGAAGTCTACCATGCTGATTGGAATGGCACAGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGCGCTGCTTTAGCTGAGTTCAAAAGAGAAGTACTGATAATGCGGCAGCTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTCACTCGTCCTCCTAACCTTTCCATTGTTACTGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCACCGCCCAAATTGTCAAATTGATGAAAGCCGCAGAATAAAAATGGCCCTTGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTAATCCAACAATTGTTCACCGAGATCTGAAGTCACCGAATCTTTTGGTTGATAAGAACTGGAATGTAAAGGTATCAGATTTTGGGTTGTCACGCTTGAAGCACAATACATTTTTGTCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAAGTTCTCCGGAATGAGCCTTCAAATGAGAAGTGTGACGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCAACATTGAGACTGCCTTGGAGTGGGATGAACCCTATGCAAGTTGTTGGTGCAGTCGGTTTCCAGAATCGACGACTCGAAATACCCAAGGAAGTGGATACCGCGGTTGCAAGGATTATCTGGGAATGCTGGCAAACCGATCCAAACTTGCGCCCCTCATTTGCACAATTAGCCAATATTTTGAAGCCACTGCAGCGGCTTGTCATGCCGCTGCATTCGGACCAGCCGAGTTCATCGGTGCTGCAAGAGATATCTGTAAATTCTACACCTTGA 2853 44.09 MKHIFKKFHIGSNHDPSRSNENPLPVAASLSSSLSSSSPCVSDNRPATAPGLTSGNSPLSPSSSPSLATTPPGGGSVTPVSVAPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAASLLSFGNHRIESTARDQGDAAEVLSRQYWEYNLLGYEDKVVNGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTVDHALEELVQIAQCIADCPGTEVRVQRLAELVMGHMGGPVKDAHFMLARWMERSTELRTSLNTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIIKLEDEREFLVDLMAAPGTLIPADILSAKDTTSIKPYNPKVSKIPSPHHYNDAGISSAKPTLLLEEGSSQNFEAEASSLVDEKLSYGRTESVPSSSGIETSRYKGAHFGDSNVRLNVNVVSLGQSSEDSKNLFEDLNPFQIKGTGKSFILNKSSDNKIEELRKPAIGHAPVPLWKNRVVFNAVPKNKEYDYMEGRFPRTNCRPNDHNTASSFSASSSVSENVNPSGSGISIDSRVPNRSAEFGSSSSNMNSRLASTMIEPNILPLKQNRKLNGEYSGNIDMQDEKVDAVVGRENLSRFDNRRKFTFDRSVGTNLILKDPGSPSILIDPSSRSRFEQVYDDVDVGQCEIQWEDLVIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPNCQIDESRRIKMALDVARGMNCLHTSNPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFQNRRLEIPKEVDTAVARIIWECWQTDPNLRPSFAQLANILKPLQRLVMPLHSDQPSSSVLQEISVNSTP 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6473971 6483075 - CmaCh10G010520.1 Cma10g01052 302368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01052 950 SUPERFAMILY Protein kinase-like (PK-like) 660 938 IPR011009 -
Cma10g01052 950 SMART serkin_6 669 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g01052 950 PANTHER SERINE-THREONINE PROTEIN KINASE 81 419 - -
Cma10g01052 950 PANTHER SERINE-THREONINE PROTEIN KINASE 411 942 - -
Cma10g01052 950 Pfam Ethylene-responsive protein kinase Le-CTR1 144 337 - -
Cma10g01052 950 Pfam Protein tyrosine and serine/threonine kinase 670 920 IPR001245 GO:0004672|GO:0006468
Cma10g01052 950 MobiDBLite consensus disorder prediction 15 81 - -
Cma10g01052 950 CDD STKc_MAP3K-like 675 921 - -
Cma10g01052 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Cma10g01052 950 Gene3D Transferase(Phosphotransferase) domain 1 748 930 - -
Cma10g01052 950 PRINTS Tyrosine kinase catalytic domain signature 743 756 IPR001245 GO:0004672|GO:0006468
Cma10g01052 950 PRINTS Tyrosine kinase catalytic domain signature 782 800 IPR001245 GO:0004672|GO:0006468
Cma10g01052 950 PRINTS Tyrosine kinase catalytic domain signature 829 839 IPR001245 GO:0004672|GO:0006468
Cma10g01052 950 PRINTS Tyrosine kinase catalytic domain signature 848 870 IPR001245 GO:0004672|GO:0006468
Cma10g01052 950 PRINTS Tyrosine kinase catalytic domain signature 892 914 IPR001245 GO:0004672|GO:0006468
Cma10g01052 950 MobiDBLite consensus disorder prediction 1 81 - -
Cma10g01052 950 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 411 942 - -
Cma10g01052 950 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 81 419 - -
Cma10g01052 950 Gene3D Phosphorylase Kinase; domain 1 662 746 - -
Cma10g01052 950 ProSiteProfiles Protein kinase domain profile. 669 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g01052 950 MobiDBLite consensus disorder prediction 516 564 - -
Cma10g01052 950 ProSitePatterns Protein kinases ATP-binding region signature. 675 697 IPR017441 GO:0005524
Cma10g01052 950 MobiDBLite consensus disorder prediction 517 564 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01276 Cma-Chr8:7757374 Cma10g01052 Cma-Chr10:6473971 1.47E-113 dispersed
Cma10g01052 Cma-Chr10:6473971 Cma11g00994 Cma-Chr11:5353144 0 dispersed
Cma10g01052 Cma-Chr10:6473971 Cma09g00335 Cma-Chr9:1377586 8.39E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68861 PF07714 PK_Tyr_Ser-Thr 6.00E-63 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01052 - - csv:101218274 1576.99