Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01055 ATGGAGATATTGGGGAGTATTAGGGATTCCATTTGGGCGGTGGCTGTGGTGTGTTTAGCCGTATGGGGATGGAGATTTTTGAACTGGATTTGGCTGAGGCCCAAGAAGCTTGAGAGGTGCCTCAGAAAGCAAGGATTCGCCGGAAATCCTTACCGGCTTCTCACCGGCGACATGAAGGACATAGCCGCCATGAGGGAGCAGGCCATATCCAGCCCCATGAACTTCTCCCATGATATTGCTCCACGTGTCATCCCCTCCATAAATCATACCTTCCACAAATATGGAAAGAATTCATTCATGTGGATTGGACCATATCCAAGAGTGCACATCATGGACCCTGATCAACTCAAAGCTGCATTCTCTTTAATGCATGATGTTCAAAAACCGTCTATCAACCCTCTTTCAAGGTTGCTTTTCGATGGACTCACTGATCATGAAGGACCCAAATGGGTTAAGCATAGAAAGATAATCAATCCAGCCTTTCATTTCAAACAATTGAAGGACATGGTGCCTGCAATGTGTGAGAGTTGCACTGAGATGATTAGGAAATGGGAAGAAGTGGTCTCAAAAGATGAATATTATGAATTGGATGTGATGCCTCATTTGGGAAACTTGGCCGCTGATGTGATTTCTCGAACAGCATTTGGAAGCAGCTATGAAGAAGGAAAAATGATCTTTATACGTCTAAAACAACTTATCAATCTAGTCGTTAAAGCTACATCTACGGTTTACATACCCGGATGGAGGTTTGTACCAACCAAGTCGAACAATATAATGAAAAAGATAAGCAAAGAATTAAAAACGTTGCTCATGGATGTTATCAACAAAAGGCAAAGGGCTATGATGGCAGGTGAAGCTATGCATAATGATCTATTAAGCATCCTCTTACAATCAAATTTGAAAGAAATTCTAGAGCATGGAAACAACGATGTCGGAATGAGTATCGAAGACATAGTAGACGAGTGTAGAGTTTTTTACCTTGCTGGCCAAGAAACCACAGCAATGCTACTAGTTTGGACAATGGTTTTATTGAGCTCATACACAAGATGGCAAGATCTAGCAAGAGAAGAGGTCCTACAAGTGTTTGGTAACAACAAACCAGATTTTGATGGTTTAAATCGCCTAAAAATTGTTACTATGATATTGAATGAAGTCTTGAGATTATACCCACCACCAGCCTTGATTTCTCGTCTAGTTCAAAACGAAATAAAGCTTGGAAAATTGAGTTTTCCAGCGGGAGTGATGCTGAGTTTTCCAATTATTCTTATCCATCGTGATAAGAATCTATGGGGTGATGATGCAAATGAGTTTAATCCCGATAGATTTGCTGAGGGAGTTTCAAAAGCGACACAAAATCAAGCTGGGTTCTTCCCGTTTGGATGGGGTCCTCGCATATGCATCGGACAGAACTTTGCCATAATTGAGGCCAAAATTGCTCTATCCATGATTCTACAACACTTTTCTTTTGAGCTTTCTTCGTCTTATAAGCATGCTCCAACATCCAATTTAACTACTAGACCTCAACATGGAGCTCATATCATGCTACTTAAACTTTAG 1557 41.04 MEILGSIRDSIWAVAVVCLAVWGWRFLNWIWLRPKKLERCLRKQGFAGNPYRLLTGDMKDIAAMREQAISSPMNFSHDIAPRVIPSINHTFHKYGKNSFMWIGPYPRVHIMDPDQLKAAFSLMHDVQKPSINPLSRLLFDGLTDHEGPKWVKHRKIINPAFHFKQLKDMVPAMCESCTEMIRKWEEVVSKDEYYELDVMPHLGNLAADVISRTAFGSSYEEGKMIFIRLKQLINLVVKATSTVYIPGWRFVPTKSNNIMKKISKELKTLLMDVINKRQRAMMAGEAMHNDLLSILLQSNLKEILEHGNNDVGMSIEDIVDECRVFYLAGQETTAMLLVWTMVLLSSYTRWQDLAREEVLQVFGNNKPDFDGLNRLKIVTMILNEVLRLYPPPALISRLVQNEIKLGKLSFPAGVMLSFPIILIHRDKNLWGDDANEFNPDRFAEGVSKATQNQAGFFPFGWGPRICIGQNFAIIEAKIALSMILQHFSFELSSSYKHAPTSNLTTRPQHGAHIMLLKL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6520871 6524588 - CmaCh10G010550.1 Cma10g01055 302371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01055 518 Pfam Cytochrome P450 87 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 SUPERFAMILY Cytochrome P450 80 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PANTHER CYTOCHROME P450 FAMILY MEMBER 12 515 - -
Cma10g01055 518 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PRINTS E-class P450 group I signature 205 223 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PANTHER CYTOCHROME 12 515 - -
Cma10g01055 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
Cma10g01055 518 Gene3D Cytochrome P450 75 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PRINTS P450 superfamily signature 457 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g01055 518 PRINTS P450 superfamily signature 466 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00688 Cma-Chr9:3245631 Cma10g01055 Cma-Chr10:6520871 4.30E-118 dispersed
Cma09g00689 Cma-Chr9:3252677 Cma10g01055 Cma-Chr10:6520871 0 dispersed
Cma10g01055 Cma-Chr10:6520871 Cma12g01226 Cma-Chr12:9549605 5.24E-132 dispersed
Cma01g01280 Cma-Chr1:9205858 Cma10g01055 Cma-Chr10:6520871 3.03E-23 transposed
Cma10g00756 Cma-Chr10:3444531 Cma10g01055 Cma-Chr10:6520871 1.08E-176 transposed
Cma10g01055 Cma-Chr10:6520871 Cma11g01020 Cma-Chr11:5532841 1.48E-175 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01055 - - csv:101213974 780.785