Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01071 ATGGAGCTTCACAATTCAACACCGCCACCACCAAACCACCACATCCATACTCACATTGCTCTTCTCACCTCCAATTCTTTCCTCATCATCATCGCCTCCATCATCTTCATCGCCGTCCTTCTCGCCCTCCTTCTCCTCATCTCCATGCTCCACCGCCTCAAAACAGCTCGAGACACCGCCGCCGCCACCGCCGCCGCACAATCCACCACATTCAACCCCCACATAGCCATCAATTTCGATTCAAACCCAGAATTTAAGGGGGATGGGTACTTATATGGAGCCAATTCTGGGAGGATTGCTCGGAATAGAATCAGGGGAGGTCAGGTTTTCACTTACAAGGAAATGGAATTGGCTACTGATAATTTTAATGAAGCTAATGTGATTGGAAATGGAAGATTTGGGATTGTTTATAGAGGAGTTCTTGGAGATGGAGCTGTGGTTGCTATTATGATGATCCATAGAGATGGGAAGCAGAGGGAACGTGCTTTCAGAATGGAGGTGGATCTTCTAAGCCGCTTGCAGTCTCCATGTCTGGTGGAGTTGCTTGGCTACTGCGCTGACAAACACCATAGGCTTCTGATATTTGAATTTATGCACAATGGTACTCTTCATCATCATCTGCATAATCCGGACACTGAATCTCAGCCATTGGATTGGAATACTAGATTGACGATAGCCCTTGATTGTGCCAAGGCACTCGAGTTCCTCCACGAGCATGCCGTTCCATCTGTTATTCATAGAAACTTCAAGTCAACCAATGTTCTATTGGATCAGGATTTCCGAGCCAAGGTTTCGGATTTTGGCTCAGCCAAGACGGGTTCCGATAAGATCAATGGTCAGATATCTACACAATTCCTCGGAACCACCGGATATCTAGCACCAGAGTATGCTTCAACAGGTAAACTTACAACAAAATCAGATGTATATAGCTATGGCGTTGTGCTACTAGAGCTATTGACGGGTCGAGTGCCAGTAGATATCAAACGGCCACAGGGCGAGCACGTTCTTGTCTCGTGGGCTCTCCCAAAGCTGACTAATAGGGAAAAAGTAGAGAAAATTATAGATCCAGCAATTCAAGGGAAATACTCAAAAAAGGATTTAATTCAGGTAGCAGCCATTGCAGCCATGTGCGTGCAGCCCGAAGCCGACTACCGGCCTTTGATGACCGATGTCATGCAGTCACTGGTTCCTCTAGTTAAGAACCGATCGGCGTCGTAG 1218 46.88 MELHNSTPPPPNHHIHTHIALLTSNSFLIIIASIIFIAVLLALLLLISMLHRLKTARDTAAATAAAQSTTFNPHIAINFDSNPEFKGDGYLYGANSGRIARNRIRGGQVFTYKEMELATDNFNEANVIGNGRFGIVYRGVLGDGAVVAIMMIHRDGKQRERAFRMEVDLLSRLQSPCLVELLGYCADKHHRLLIFEFMHNGTLHHHLHNPDTESQPLDWNTRLTIALDCAKALEFLHEHAVPSVIHRNFKSTNVLLDQDFRAKVSDFGSAKTGSDKINGQISTQFLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPQGEHVLVSWALPKLTNREKVEKIIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVMQSLVPLVKNRSAS 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6785035 6788526 - CmaCh10G010710.1 Cma10g01071 302387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01071 405 Pfam Protein tyrosine and serine/threonine kinase 126 395 IPR001245 GO:0004672|GO:0006468
Cma10g01071 405 ProSiteProfiles Protein kinase domain profile. 122 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g01071 405 PANTHER OS01G0750732 PROTEIN 10 404 - -
Cma10g01071 405 CDD STKc_IRAK 128 398 - -
Cma10g01071 405 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 10 404 - -
Cma10g01071 405 Gene3D Transferase(Phosphotransferase) domain 1 198 405 - -
Cma10g01071 405 Gene3D Phosphorylase Kinase; domain 1 95 197 - -
Cma10g01071 405 SUPERFAMILY Protein kinase-like (PK-like) 104 395 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01071 Cma-Chr10:6785035 Cma11g01121 Cma-Chr11:6304589 0 dispersed
Cma17g00888 Cma-Chr17:6754756 Cma10g01071 Cma-Chr10:6785035 5.52E-90 dispersed
Cma10g01071 Cma-Chr10:6785035 Cma11g01895 Cma-Chr11:12565768 2.84E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68863 PF07714 PK_Tyr_Ser-Thr 3.20E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01071 - - csv:101210578 640.958