Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01076 ATGGATCAGCAAGGGCAGGGCCAGTCTCCATCCATGGGAGCGGTAGGCAGCGGAGGTCAGATAGCATATGGTAGCAGCAGCATGTACCATCCCAGCCAAATGACTGTCGGCCCGACATCTGGATCTCAGTCTACTAGTCAGCCAAGTGGAGCTCAGCTTGCTCAACATCAGCTTGCTTATCAGCATATCCACCAGCAGCAACAACAACAGCTTCAACAACAGCTCCAGGCTTTTTGGTCAAATCAATACCAAGAGATTGAGAGAGTAATAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTGCGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGAGCATGTGAAATGTTCATCCTAGAATTGACTTTACGGTCATGGAGTCATACCGAAGAGAACAAGCGTAGGACACTGCAAAAGAATGACATTGCTGCAGCTATCACAAGAACTGATATCTTCGACTTTCTGGTTGATATCGTGCCAAGGGAGGATCTGAAAGATGAAGCACTCACGTCGATTCCAAGAGGCTCAATAACAGTCGGGGCCCCCGGAGATGCACTTCCTTACTGCTATATGTCGTCTCAGCATGCATCTCAGGCTGGGACACCAGGAATGATTATGGGCAAGCCCGTGATGGACCCGGGTAGTTATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCATGGCCAAGATCGAACCCCGACCGATCAATAG 762 48.82 MDQQGQGQSPSMGAVGSGGQIAYGSSSMYHPSQMTVGPTSGSQSTSQPSGAQLAQHQLAYQHIHQQQQQQLQQQLQAFWSNQYQEIERVIDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWSHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEALTSIPRGSITVGAPGDALPYCYMSSQHASQAGTPGMIMGKPVMDPGSYAQQSHPYMPPQMWQHGQDRTPTDQ 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6907923 6908684 + CmaCh10G010760.1 Cma10g01076 302392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01076 253 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 248 - -
Cma10g01076 253 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 248 - -
Cma10g01076 253 MobiDBLite consensus disorder prediction 229 253 - -
Cma10g01076 253 MobiDBLite consensus disorder prediction 1 54 - -
Cma10g01076 253 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 96 159 IPR003958 -
Cma10g01076 253 Gene3D Histone, subunit A 58 174 IPR009072 GO:0046982
Cma10g01076 253 MobiDBLite consensus disorder prediction 233 253 - -
Cma10g01076 253 SUPERFAMILY Histone-fold 51 168 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00058 Cma-Chr10:216025 Cma10g01076 Cma-Chr10:6907923 1.38E-68 dispersed
Cma10g01076 Cma-Chr10:6907923 Cma11g01124 Cma-Chr11:6367027 4.25E-156 dispersed
Cma10g01076 Cma-Chr10:6907923 Cma11g01619 Cma-Chr11:10651697 6.66E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35758 PF00808 CBFD_NFYB_HMF 2.30E-18 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01076 K08066 - csv:101209664 380.948