Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g01076 | ATGGATCAGCAAGGGCAGGGCCAGTCTCCATCCATGGGAGCGGTAGGCAGCGGAGGTCAGATAGCATATGGTAGCAGCAGCATGTACCATCCCAGCCAAATGACTGTCGGCCCGACATCTGGATCTCAGTCTACTAGTCAGCCAAGTGGAGCTCAGCTTGCTCAACATCAGCTTGCTTATCAGCATATCCACCAGCAGCAACAACAACAGCTTCAACAACAGCTCCAGGCTTTTTGGTCAAATCAATACCAAGAGATTGAGAGAGTAATAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTGCGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGAGCATGTGAAATGTTCATCCTAGAATTGACTTTACGGTCATGGAGTCATACCGAAGAGAACAAGCGTAGGACACTGCAAAAGAATGACATTGCTGCAGCTATCACAAGAACTGATATCTTCGACTTTCTGGTTGATATCGTGCCAAGGGAGGATCTGAAAGATGAAGCACTCACGTCGATTCCAAGAGGCTCAATAACAGTCGGGGCCCCCGGAGATGCACTTCCTTACTGCTATATGTCGTCTCAGCATGCATCTCAGGCTGGGACACCAGGAATGATTATGGGCAAGCCCGTGATGGACCCGGGTAGTTATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCATGGCCAAGATCGAACCCCGACCGATCAATAG | 762 | 48.82 | MDQQGQGQSPSMGAVGSGGQIAYGSSSMYHPSQMTVGPTSGSQSTSQPSGAQLAQHQLAYQHIHQQQQQQLQQQLQAFWSNQYQEIERVIDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWSHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEALTSIPRGSITVGAPGDALPYCYMSSQHASQAGTPGMIMGKPVMDPGSYAQQSHPYMPPQMWQHGQDRTPTDQ | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6907923 | 6908684 | + | CmaCh10G010760.1 | Cma10g01076 | 302392 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g01076 | 253 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 1 | 248 | - | - | |
Cma10g01076 | 253 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 1 | 248 | - | - | |
Cma10g01076 | 253 | MobiDBLite | consensus disorder prediction | 229 | 253 | - | - | |
Cma10g01076 | 253 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Cma10g01076 | 253 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 96 | 159 | IPR003958 | - | |
Cma10g01076 | 253 | Gene3D | Histone, subunit A | 58 | 174 | IPR009072 | GO:0046982 | |
Cma10g01076 | 253 | MobiDBLite | consensus disorder prediction | 233 | 253 | - | - | |
Cma10g01076 | 253 | SUPERFAMILY | Histone-fold | 51 | 168 | IPR009072 | GO:0046982 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00058 | Cma-Chr10:216025 | Cma10g01076 | Cma-Chr10:6907923 | 1.38E-68 | dispersed | |
Cma10g01076 | Cma-Chr10:6907923 | Cma11g01124 | Cma-Chr11:6367027 | 4.25E-156 | dispersed | |
Cma10g01076 | Cma-Chr10:6907923 | Cma11g01619 | Cma-Chr11:10651697 | 6.66E-79 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35758 | PF00808 | CBFD_NFYB_HMF | 2.30E-18 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g01076 | K08066 | - | csv:101209664 | 380.948 |