Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01091 ATGGGGTGTTTGGTAAGCCGAGAGGTGTCTTCTAGAAATGCAGAATCCCCTGTAGATAAGGAAAGGAGAAATCCAATTACTGTAGAACATGTGAGTGCTAATGTAGAGGAGCATGTAAATGTAACCAAGGAGGAGCAGAAAGCTGATGGATGTTCGGATCGTCCACAAGCTAAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCGACGAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATAATTACAGGTAAAATTGTCGCACTGAAGAAGGTTCGATTCGACAATCTCGAACCTGAAAGTGTTCAATTTATGGCTAGAGAGATTCTCATTCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGGTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTATATGGAGCATGATTTAGCTGGTCTTGCTGCGAATCCATCGATCAAATTTACGGAGTCTCAGGTTAAATGTTTCGTGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGTCGGGTGCTTCATCGTGACATTAAAGGATCTAACCTTCTCATTGATAGTGGGGGAGTGCTTAAGATAGCTGACTTTGGATTGGCTTCTATCTTTGATCCGAATCACAAGCACCCTATGACTAGTCGGGTGGTTACGTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTTGGTGTGGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGTCGTACAGAGGTAGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATACTGGAAAAGAGCAAAACTTCCAAATTCAACCTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACGTTTAAAGATTTCCCGCCATCTTCACTGCCCCTTATCGAAACGCTTCTTGCAATTGATCCAGTAGAACGAAAGGAAGCAACAGATGCATTAAATAACGAGTTCTTCATGACAGAACCTTTAGCTTGCGAACCTTCTGACCTCCCAAAATATCCTCCCAGTAAGGAGATGGATGCTAGGAGACGAGATGATGAAGCTCGGAGATTAAGAGCAGCTAGTAAAGCCCAGGGAGATGGAACGAAAAAAACACGCACACGTGTTCGGGCTATTCCAGCTCCTGAAGCCAACGCCGAAATACAAACTAATATCGACAGAAGACGCATAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTTCCCCCACCACACCAGGATGGAGAGCTTGGCTATACGCTAGGACATTCGCGTCATATCGACCCATCCCGTGTTCCTTCCGACATACCATTCAGCTCGACGACGCTTTTCACTTATTCTAAGGAGCCACTCCAAGCCTGGTCTGGTCCACTAGTCCCTGGCTCTGGCACTGATGCTCCTACTAGACACAAGAAGCATGTAGGAGGTAAAGGCAAGAGAATCATGGTCTAA 1656 44.57 MGCLVSREVSSRNAESPVDKERRNPITVEHVSANVEEHVNVTKEEQKADGCSDRPQAKRRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDIITGKIVALKKVRFDNLEPESVQFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFVQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNSTLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPVERKEATDALNNEFFMTEPLACEPSDLPKYPPSKEMDARRRDDEARRLRAASKAQGDGTKKTRTRVRAIPAPEANAEIQTNIDRRRIITHANAKSKSEKFPPPHQDGELGYTLGHSRHIDPSRVPSDIPFSSTTLFTYSKEPLQAWSGPLVPGSGTDAPTRHKKHVGGKGKRIMV 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7213800 7219014 + CmaCh10G010910.1 Cma10g01091 302407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01091 551 MobiDBLite consensus disorder prediction 13 27 - -
Cma10g01091 551 CDD STKc_CDK9_like 107 391 - -
Cma10g01091 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Cma10g01091 551 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Cma10g01091 551 SMART serkin_6 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g01091 551 SUPERFAMILY Protein kinase-like (PK-like) 101 395 IPR011009 -
Cma10g01091 551 MobiDBLite consensus disorder prediction 401 440 - -
Cma10g01091 551 MobiDBLite consensus disorder prediction 1 78 - -
Cma10g01091 551 Pfam Protein kinase domain 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g01091 551 MobiDBLite consensus disorder prediction 527 551 - -
Cma10g01091 551 MobiDBLite consensus disorder prediction 36 56 - -
Cma10g01091 551 MobiDBLite consensus disorder prediction 406 440 - -
Cma10g01091 551 Gene3D Transferase(Phosphotransferase) domain 1 190 430 - -
Cma10g01091 551 ProSiteProfiles Protein kinase domain profile. 107 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g01091 551 PANTHER CELL DIVISION PROTEIN KINASE 47 535 - -
Cma10g01091 551 Gene3D Phosphorylase Kinase; domain 1 94 189 - -
Cma10g01091 551 PANTHER OS01G0367700 PROTEIN 47 535 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g01091 Cma12g01100 CCT
Cma10g01091 Cma12g01100 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01091 Cma-Chr10:7213800 Cma11g01252 Cma-Chr11:8335758 0 dispersed
Cma10g01091 Cma-Chr10:7213800 Cma06g01464 Cma-Chr6:9351664 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68864 PF00069 Pkinase 8.30E-66 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01091 K08819 - csv:101215893 1022.31