Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g01091 | ATGGGGTGTTTGGTAAGCCGAGAGGTGTCTTCTAGAAATGCAGAATCCCCTGTAGATAAGGAAAGGAGAAATCCAATTACTGTAGAACATGTGAGTGCTAATGTAGAGGAGCATGTAAATGTAACCAAGGAGGAGCAGAAAGCTGATGGATGTTCGGATCGTCCACAAGCTAAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCGACGAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATAATTACAGGTAAAATTGTCGCACTGAAGAAGGTTCGATTCGACAATCTCGAACCTGAAAGTGTTCAATTTATGGCTAGAGAGATTCTCATTCTTAGGAGATTAAATCATAACAATGTTGTGAAATTGGAGGGGTTGGTTACATCACGGATGTCTTGTAGTTTATACTTGGTGTTTGAGTATATGGAGCATGATTTAGCTGGTCTTGCTGCGAATCCATCGATCAAATTTACGGAGTCTCAGGTTAAATGTTTCGTGCAACAACTGCTATCTGGACTGGAACACTGTCATAATCGTCGGGTGCTTCATCGTGACATTAAAGGATCTAACCTTCTCATTGATAGTGGGGGAGTGCTTAAGATAGCTGACTTTGGATTGGCTTCTATCTTTGATCCGAATCACAAGCACCCTATGACTAGTCGGGTGGTTACGTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTTGGTGTGGACCTCTGGAGTGCTGGGTGTATACTGGCTGAGTTATTAGCTGGGAGGCCTATTATGCCTGGTCGTACAGAGGTAGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATACTGGAAAAGAGCAAAACTTCCAAATTCAACCTTATTTAAGCCCAGAGAACCTTATAAAAGATGTATAAAGGAGACGTTTAAAGATTTCCCGCCATCTTCACTGCCCCTTATCGAAACGCTTCTTGCAATTGATCCAGTAGAACGAAAGGAAGCAACAGATGCATTAAATAACGAGTTCTTCATGACAGAACCTTTAGCTTGCGAACCTTCTGACCTCCCAAAATATCCTCCCAGTAAGGAGATGGATGCTAGGAGACGAGATGATGAAGCTCGGAGATTAAGAGCAGCTAGTAAAGCCCAGGGAGATGGAACGAAAAAAACACGCACACGTGTTCGGGCTATTCCAGCTCCTGAAGCCAACGCCGAAATACAAACTAATATCGACAGAAGACGCATAATTACACATGCAAATGCAAAGAGCAAAAGTGAAAAGTTTCCCCCACCACACCAGGATGGAGAGCTTGGCTATACGCTAGGACATTCGCGTCATATCGACCCATCCCGTGTTCCTTCCGACATACCATTCAGCTCGACGACGCTTTTCACTTATTCTAAGGAGCCACTCCAAGCCTGGTCTGGTCCACTAGTCCCTGGCTCTGGCACTGATGCTCCTACTAGACACAAGAAGCATGTAGGAGGTAAAGGCAAGAGAATCATGGTCTAA | 1656 | 44.57 | MGCLVSREVSSRNAESPVDKERRNPITVEHVSANVEEHVNVTKEEQKADGCSDRPQAKRRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDIITGKIVALKKVRFDNLEPESVQFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFVQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNSTLFKPREPYKRCIKETFKDFPPSSLPLIETLLAIDPVERKEATDALNNEFFMTEPLACEPSDLPKYPPSKEMDARRRDDEARRLRAASKAQGDGTKKTRTRVRAIPAPEANAEIQTNIDRRRIITHANAKSKSEKFPPPHQDGELGYTLGHSRHIDPSRVPSDIPFSSTTLFTYSKEPLQAWSGPLVPGSGTDAPTRHKKHVGGKGKRIMV | 551 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 7213800 | 7219014 | + | CmaCh10G010910.1 | Cma10g01091 | 302407 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g01091 | 551 | MobiDBLite | consensus disorder prediction | 13 | 27 | - | - | |
Cma10g01091 | 551 | CDD | STKc_CDK9_like | 107 | 391 | - | - | |
Cma10g01091 | 551 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 227 | 239 | IPR008271 | GO:0004672|GO:0006468 | |
Cma10g01091 | 551 | ProSitePatterns | Protein kinases ATP-binding region signature. | 113 | 136 | IPR017441 | GO:0005524 | |
Cma10g01091 | 551 | SMART | serkin_6 | 107 | 391 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma10g01091 | 551 | SUPERFAMILY | Protein kinase-like (PK-like) | 101 | 395 | IPR011009 | - | |
Cma10g01091 | 551 | MobiDBLite | consensus disorder prediction | 401 | 440 | - | - | |
Cma10g01091 | 551 | MobiDBLite | consensus disorder prediction | 1 | 78 | - | - | |
Cma10g01091 | 551 | Pfam | Protein kinase domain | 107 | 391 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma10g01091 | 551 | MobiDBLite | consensus disorder prediction | 527 | 551 | - | - | |
Cma10g01091 | 551 | MobiDBLite | consensus disorder prediction | 36 | 56 | - | - | |
Cma10g01091 | 551 | MobiDBLite | consensus disorder prediction | 406 | 440 | - | - | |
Cma10g01091 | 551 | Gene3D | Transferase(Phosphotransferase) domain 1 | 190 | 430 | - | - | |
Cma10g01091 | 551 | ProSiteProfiles | Protein kinase domain profile. | 107 | 391 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma10g01091 | 551 | PANTHER | CELL DIVISION PROTEIN KINASE | 47 | 535 | - | - | |
Cma10g01091 | 551 | Gene3D | Phosphorylase Kinase; domain 1 | 94 | 189 | - | - | |
Cma10g01091 | 551 | PANTHER | OS01G0367700 PROTEIN | 47 | 535 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g01091 | Cma12g01100 | CCT | |
Cma10g01091 | Cma12g01100 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g01091 | Cma-Chr10:7213800 | Cma11g01252 | Cma-Chr11:8335758 | 0 | dispersed | |
Cma10g01091 | Cma-Chr10:7213800 | Cma06g01464 | Cma-Chr6:9351664 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68864 | PF00069 | Pkinase | 8.30E-66 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g01091 | K08819 | - | csv:101215893 | 1022.31 |