Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01113 ATGGGTTGTGTTCTAATGATTATTATCTTCATGTCCATACCTTTTTCAACGCAGAACTCCCACATTTTGATTGCTAACTCACCATTGAATGCAGCAGAGAGCTTCGATGTTGAAGAGTTAGAGAGGGTTTCGGGGGAAGATGAGAGTGGAGGAAATGAGCCTTTCATTCTGGAGAGATTCAGAGCTCTACTTGGACTCAAGAGCTTACAATCGGATCTTTCGTTTTCGCCGTCGCCGTCGCCGTCGCCGTCTCCATCACCAGCAGCCATTGCTCCTTCCCCTGTTCATGTGGCAACTCATCGAGTGCACATTCATGAGCATTCCCACCCTCATCAGCTTCGCTTGCACAAGAGACGACCAGTATACAAACCTAAAAGAGAGGAAGATGCAAGAGAAGGAAGAGTCAGAAAAATTCTTGTTGCAGTTCTTGTGTCTGCAGGAGTCACCATTTTGATATGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAACTCAGAGAGAGGAAGCCACGGAGAAGCTTTCTGTTAAGAGTGAAACAGTAGAAAAGTCAGCTAAACCAAATTCACCAAAATCACCAAAATCTGGCCTTGATCCGTTCGATCTCGGTATGCTTGGAATGGATGCTGAAGAACAGACCCAATGTTCTGTAAGTGAAAAGGAGATATCTGGTCATAAAGAGAGGGAAATGGGCCAAGAGATGTTAGATTCAGAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAATGCGTATCTGCTAAAGCTGATTCCTCATCTGGGGATAGAATTACTCCTGTTAAATCTTGTTCTTCTGATGATGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTGTCGAATGCTCGCCTTTCAAATGCTTCAGAATCTTCTTCTGCTAATGTGATAACAAAATCTACTTGTTCAGTGCCAACTATGAACTTACCAAGTAAATTGGAAACACAATGTGATGATTCTAACAAACCATCAACTTCTGACCAGTCGCATATTACCCTTTCTCCTTGCAATCCAGAAAGCAAAATGCAGATGGTTTCCCTCTCTGTAGGTGGCCAAAAGAATGTCCCATCTCTATCTCCGCCTCCGCCGCCACCACCACTGCCGCCACCAATCACGGATCGCAGCTCTTTCTCCCTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCTTCTGCATTGTTAAGATCATCATCTCCAGCAATGTCAGATTCTTCTTCGTTATCTCAAATACCATGGAATGATCTGACATCACCTAATCCTGCTGCTAAACCTTCACTACCATCATCTTCTATACCTCCACCCCCTTCTCCACCACCAAGTTTGAAAGCAAAGGCTTACTCTTTCAAAACTCCACCACCTCTTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTCGCGGCCCAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTGCACCAGATCGATCAATGGTTTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGACGAAGAAATGATTGAGTCACTATTTGGCTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGCCCTTCTCCAACCAAGCATATACTAGAGGCAAAGAGACTTCAGAATCTAACCATTCTCTTAAAAGCCCTGAATCTCTCTACAGAACAAGTTTGTGAAGCCATAGAACAAGGGACGGGGATGCGTTTGAGACAACTTGAAGCACTGGTGAAGATGGTACCAACACAGGAAGAAGAGGCCAAATTGTTAAGCTATGAAGGAAACATCGGTGAATTGGGGTTTACAGAAAATTTTGTGATATCAATTCTGAAAATACCATTCGCCTTCCAACGAGTAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAATCATCTCCGGAATTCGTTTTCCATACTAGAGGAAGCCTGTAAGGAGCTAAAATCGAGCAGGCTCTTCCTGAAACTACTGGAAGCGGTGCTCAAAACAGGGAACCGAATGAACGTCGGAACAAGCAGAGGAGGCGCAAGAGCATTCAAACTAGACGCACTCCTAAAACTATCCGACGTCAAAGGAACGGACGGAAAAACCTCCCTACTCCACTTCGTGGTGCAAGAAATGATCCGATCAGAAGGAATCAGAGTGTCCGGTAGCATAATGGGGAAAATCAGCCAAAAAAACAAATCGAGAACAATAGAAGAAAGAGAGAACGATTACCGAAGAATGGGATTAGATCTGGTATCCGGCCTGAGCACGGAATTGCACAACGTGAAGCGAGCGGCAACAATCGATCTGAAAGTTGTTGCAAGCTTGAGGGGGAATCTGAACGACGGAATGGCGAAACTGCAAAAACTGGTGGGGAAGGAGTTGAGCGTGGATGAAAGGAGCGGGAATTTCGTAGGCGCCATGAAGGGATTCATGAGCTACGTGAAGAAGACGATGGAGGAGGTGAGGAAGGACGAAGAAGGGGTGATGTCGAGCGTGAGGGAAATCACAGAGTACTTCCATGGAAATGTGAGCAAAGAGGAGACGAATCCGCTGAGGATTTTTGTGATTGTGAGAGATTTTCTTGGAATGTTGGACAGTGTTTGTAAGAGCTTCAAGATTGGAAGTTCATAG 2685 44.13 MGCVLMIIIFMSIPFSTQNSHILIANSPLNAAESFDVEELERVSGEDESGGNEPFILERFRALLGLKSLQSDLSFSPSPSPSPSPSPAAIAPSPVHVATHRVHIHEHSHPHQLRLHKRRPVYKPKREEDAREGRVRKILVAVLVSAGVTILICSIIAFWVCKKFKTQREEATEKLSVKSETVEKSAKPNSPKSPKSGLDPFDLGMLGMDAEEQTQCSVSEKEISGHKEREMGQEMLDSEFDNVSVSSTKEMMYVHEEDDSKSIQCVSAKADSSSGDRITPVKSCSSDDEESFHSCGDSNLSNARLSNASESSSANVITKSTCSVPTMNLPSKLETQCDDSNKPSTSDQSHITLSPCNPESKMQMVSLSVGGQKNVPSLSPPPPPPPLPPPITDRSSFSLSSPFSTGSTSSSALLRSSSPAMSDSSSLSQIPWNDLTSPNPAAKPSLPSSSIPPPPSPPPSLKAKAYSFKTPPPLPSKLPQFMAFGKEGNSRPKLKPLHWDKVRAAPDRSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPTKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGTGMRLRQLEALVKMVPTQEEEAKLLSYEGNIGELGFTENFVISILKIPFAFQRVEAMLYRETFEDEVNHLRNSFSILEEACKELKSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKISQKNKSRTIEERENDYRRMGLDLVSGLSTELHNVKRAATIDLKVVASLRGNLNDGMAKLQKLVGKELSVDERSGNFVGAMKGFMSYVKKTMEEVRKDEEGVMSSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDSVCKSFKIGSS 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7607891 7611570 - CmaCh10G011130.1 Cma10g01113 302429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01113 894 MobiDBLite consensus disorder prediction 445 461 - -
Cma10g01113 894 Coils Coil 645 665 - -
Cma10g01113 894 MobiDBLite consensus disorder prediction 170 200 - -
Cma10g01113 894 Pfam Formin Homology 2 Domain 486 882 IPR015425 -
Cma10g01113 894 SMART it6_source 484 894 IPR015425 -
Cma10g01113 894 ProSiteProfiles Formin homology-2 (FH2) domain profile. 484 894 IPR015425 -
Cma10g01113 894 MobiDBLite consensus disorder prediction 324 375 - -
Cma10g01113 894 MobiDBLite consensus disorder prediction 376 392 - -
Cma10g01113 894 MobiDBLite consensus disorder prediction 324 466 - -
Cma10g01113 894 MobiDBLite consensus disorder prediction 105 128 - -
Cma10g01113 894 PANTHER FORMIN-LIKE PROTEIN 39 387 - -
Cma10g01113 894 PANTHER FORMIN-LIKE PROTEIN 378 890 - -
Cma10g01113 894 MobiDBLite consensus disorder prediction 393 444 - -
Cma10g01113 894 PANTHER FORMIN-RELATED 39 387 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma10g01113 894 PANTHER FORMIN-RELATED 378 890 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma10g01113 894 MobiDBLite consensus disorder prediction 268 296 - -
Cma10g01113 894 SUPERFAMILY Formin homology 2 domain (FH2 domain) 497 887 - -
Cma10g01113 894 Gene3D Formin, FH2 domain 481 890 IPR042201 -
Cma10g01113 894 MobiDBLite consensus disorder prediction 105 121 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01114 Cma10g01113 CCT
Cma10g01113 Cma11g01134 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01882 Cma-Chr4:9679017 Cma10g01113 Cma-Chr10:7607891 9.75E-113 dispersed
Cma10g01113 Cma-Chr10:7607891 Cma20g00639 Cma-Chr20:2975163 2.07E-104 dispersed
Cma19g00185 Cma-Chr19:1217972 Cma10g01113 Cma-Chr10:7607891 6.22E-113 dispersed
Cma10g01113 Cma-Chr10:7607891 Cma11g01134 Cma-Chr11:6466353 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01113 - - bhj:120070661 1358.97