Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01132 ATGGCTAATTTTAAAACAGGGCCGTCCCTCAGTTCGGACCCAAGTTCTGGAATCTTTTTACGCCGGCCCGCACCGGCAGAAGAACGCAGCTCGCAGACTCAGAGAGCTACAATGGGGATCGATCTCGTCGCAGGAGGTAAGAGCAAGAAGACCAAGAGGACTGCGCCCAAATCTGATGATATCTATCTCAAGTTACTTGTAAAGCTTTACCGCTTTCTTGTTCGTCGGACTGGAAGCAAGTTCAATGCTGTGATTCTCAAGCGCCTGTTTATGAGCAGGGTTAACAAGCCTCCACTTTCACTCTCTAGGCTTATCCAGTTCACGAAAGGAAAGGAAAGTAAGATTGCTGTCGTTGTTGGGACTATTACCGATGATATTCGTGTCTATGAAGTTCCAGCATTGAAAGTTGCTGCTCTGAGGTTTACTGAGACAGCAAGGGCAAGGATTGAGAAGGCTGGTGGGGAGTGCTTGACATTTGACCAGCTTGCTTTGAGGGCTCCACTGGGTCAGAACACGGTTCTTCTTAGAGGTTCTAAGAACTCCCGGGAGGCTGTGAAGCATTTTGGTCCCGCACCTGGTGTACCGCACAGCCATAGCAAACCGTATGTGAGGTCGAAGGGAAGGAAGTTTGAGAGGGCAAGAGGAAAGAGAAACAGCAGGGGATACAGGATTGCGAATTATTTAAAATCTTGGATTATTTGTTCCGATATGGAAGATCGAAATTCGTGCATTTCGAACATACAACATGAGCTAGGAAGAAGTGTGAACTCCAATCCAAGCTCTGTCTTGAGTGCTGCGATTAGAGCGACGCTTAACGAAGCGAGACGAGCCATAGAGTCCATAACAAAGTTCAGCACGTTCTCGTTTAGCTATCGGGAAGAAATGGCGATCGAGGACTGTAAGGAGCTTCTCGATTTCTCTGTTTCCGAGCTCGCTTGGTCGTTAGCCGAGATGAAAAGGATTCGTACAGGCAAAAATGAAGCTCCGGATGAAGGGAATCTAAAAGCATGGCTGAGTGCCGCTCTTAGCAACCAAGACACATGCCTTGAAGGCTTTGAGGGCACGGACAGACATCTTGTGGGCTTCATTAGAGGTAGTTTGAAGCAAGTTACGCTTCTCATTAACAATGTCTTGGCATTGTATACTCAATTACACAGCTCGCCGTTTCAACCCCCACCGAATGAAACGATAGAGATAACCAAGAGTTCGGAATTTCCAGATTGGATGATGGATAACGAGCATGAGCTCGTGAAATCTCATCCACGTAGTGCTCATGTCGATGCAATTGTTGCTTTGGATGGAAGCGGAGATTTTCGTTCCATCACTGAGGCGGTAAACGAAGCTCCAAATTATAGCTATAGAAGGTACATCATATATATAAAGAAGGGAGTTTACAAAGAAAATATCGACATGAAGCGAAAGAAAACCAACATAATGTTTATTGGAGATGGTATCGGAGAAACGGTAGTGACGGGAAGTCGCAATTTTCTTCAAGGATGGACTACGTTCAGAACTGCAACGGTTGCTGGACCACAAAACCATCAGGCAGTGGCACTTCGAGTCGACTCTGATCAATCAGCCTTCTATCGGTGCAGCTTCGAAGGCTATCAAGACACACTCTACGTCCACTCCCTACGCCAGTTTTACAGGGAATGTAACATTTACGGCACGATAGACTACATCTTCGGCAACGGGGCAGCAGTGTTCCAAAAATGTAACATCTACACTAGAGTTCCGCTCCCGCTTCAGAAGGTCACGATCACCGCTCAAGGTCGAAAATCCCCCCACCAGAGTACAGGGTTTTCGATCCAAGACAGCTTTATTTACGCAACTCAACCAACATATCTTGGAAGACCATGGAAGCTATACTCAAGGACGGTCTTCTTGAACACTTACATGAGTGGCTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGTAACTTTGCTTTAGACACATTGTGGTATGGAGAGTTTAAAAACTATGGACCCGGTGCACCCCTTTCGGGTCGGGTCAAATGGCCCGGGTACCACAATATCCGAGACACCGCTGTAGCTACGTTCTTCACTCCTATGCGCTTCATTAACGGTCGAACATGGTTACCAAAAACCGGGATTAAATTCACATTGGGATTGAGTAATTAA 2145 46.57 MANFKTGPSLSSDPSSGIFLRRPAPAEERSSQTQRATMGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSRVNKPPLSLSRLIQFTKGKESKIAVVVGTITDDIRVYEVPALKVAALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGSKNSREAVKHFGPAPGVPHSHSKPYVRSKGRKFERARGKRNSRGYRIANYLKSWIICSDMEDRNSCISNIQHELGRSVNSNPSSVLSAAIRATLNEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVSELAWSLAEMKRIRTGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHLVGFIRGSLKQVTLLINNVLALYTQLHSSPFQPPPNETIEITKSSEFPDWMMDNEHELVKSHPRSAHVDAIVALDGSGDFRSITEAVNEAPNYSYRRYIIYIKKGVYKENIDMKRKKTNIMFIGDGIGETVVTGSRNFLQGWTTFRTATVAGPQNHQAVALRVDSDQSAFYRCSFEGYQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALDTLWYGEFKNYGPGAPLSGRVKWPGYHNIRDTAVATFFTPMRFINGRTWLPKTGIKFTLGLSN 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7805763 7821051 + CmaCh10G011320.1 Cma10g01132 302448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01132 714 Gene3D - 425 714 IPR012334 -
Cma10g01132 714 Pfam Ribosomal protein 60S L18 and 50S L18e 39 223 IPR021131 -
Cma10g01132 714 TIGRFAM PME_inhib: pectinesterase inhibitor domain 233 385 IPR006501 GO:0004857
Cma10g01132 714 Pfam Pectinesterase 427 697 IPR000070 GO:0030599|GO:0042545
Cma10g01132 714 Gene3D - 38 224 - -
Cma10g01132 714 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 233 385 IPR035513 -
Cma10g01132 714 SMART PMEI_2 223 380 IPR006501 GO:0004857
Cma10g01132 714 MobiDBLite consensus disorder prediction 1 16 - -
Cma10g01132 714 SUPERFAMILY Pectin lyase-like 426 711 IPR011050 -
Cma10g01132 714 PANTHER PECTINESTERASE 232 711 - -
Cma10g01132 714 Pfam Plant invertase/pectin methylesterase inhibitor 233 380 IPR006501 GO:0004857
Cma10g01132 714 Gene3D Invertase/pectin methylesterase inhibitor family protein 231 386 IPR035513 -
Cma10g01132 714 MobiDBLite consensus disorder prediction 1 54 - -
Cma10g01132 714 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 232 711 - -
Cma10g01132 714 ProSitePatterns Pectinesterase signature 2. 554 563 IPR033131 -
Cma10g01132 714 CDD PMEI-like_4 257 384 - -
Cma10g01132 714 SUPERFAMILY Ribosomal proteins L15p and L18e 57 176 IPR036227 -
Cma10g01132 714 ProSitePatterns Pectinesterase signature 1. 452 471 IPR018040 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g01132 Cma11g01196 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01132 Cma-Chr10:7805763 Cma16g00050 Cma-Chr16:219206 1.95E-132 dispersed
Cma06g00175 Cma-Chr6:875934 Cma10g01132 Cma-Chr10:7805763 2.77E-154 transposed
Cma11g01196 Cma-Chr11:7101418 Cma10g01132 Cma-Chr10:7805763 2.31E-132 transposed
Cma10g01132 Cma-Chr10:7805763 Cma05g01097 Cma-Chr5:8641333 6.42E-122 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01132 K01051 - csv:101202977 899.427