Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01133 ATGGCTTATGATGAAGATGATTCTGGGAACAATAAGAGATACGCCATCATCGGTGTCTCGTCGATGTTACTAGTCGCAATGGTGGTGGCAGTCACGGTGGGCGTTAACCTAAACAATGACGAAGCGGGCGGTCCGACCTCTGGAACCAAATCCAATGAAATATCTGCTTCGGTGAAAGCCATTAAATCCATTTGCCAAACCACGGATTATAAAAAGGACTGTGTTGATAGTCTTAAGTCTAATGCTAACAACTCTGCTGACCCACATGAATTGGTTAAAGCTGGGTTCAAAGCTGCCATGAAGTTACTCCAAGCCGCTGCTAAACAATCTGTCACCTTGCAACAACTTGAGCAAGACCCTAGAGCCTCCCAAGCCCTTGCTGGCTGTAAGGAGCTCATGGACTTCGCCATCGACGAGCTTAAATTCTCAATGAGTAGGTTTGGTGATTTCGACACTACGCACCTCGATGAAATGTTGATCGATCTTAAGATCTGGCTCAGTGCCACCATTACGTACCAGGAAACTTGCTTGGATTCGTTTGAAAACACGACGGGGGATGCGTCGGAGAAGATGAAGAAGGCATTGAAGACGTCGATGCGGTTGAGTAGCAATGGATTGGCGATGGTGACCGAGATCTCATCCATGTTGACAGATTTGAAGGTGCCAGGGATCGGCCGACGGCGACTTCTTGATGCTCCTGTTGTCGTCGGGCATGAAGATTACCCCGAGTGGGCGGACCCCGGGATACGGCGGCTACTGGCGGCGAAGGGGAATGTGAAGGCAAACTTTGTGGTGGCTGTGGATGGAAGTGGGGATTTCAAGAGCATTCAATCAGCTATTGACAAAGTTCCAAAGAGGAAGAACAACGAAACTTTTGTGATTCATATCAAGGAAGGAGTGTATAAGGAATACGTGACCATTAAAAAATCCATCACCCATTTGATGCTCATCGGCGATGGCCCGAAAAAGACGATCATCAGTGGCCATAAGAACTTCTTCGATGGCATTACCACATTCAAAACTGCAACCGTTGCTGTGACGGCAGAGCACTTCCGGGCAAGAGACATAGGGTTCGTGAACACAGCAGGACCACACAAGCACCAAGCAGTAGCATTACGAGTCCAAGCAGACAAAGCCATATTCTTCAACTGTGAGATGCATGGCTACCAAGACACACTCTACGTCCACACCATGCGACAATTCTACAGAGACTGCATCGTCTCTGGCACCATCGACTTCATCTTCGGCGATGCAGCCGTCGTCTTCCAAAACTGCATCTTCCTAATCCGCAAGCCGCTTTCAAATCAACAAAACATCGTCACAGCACACGGCCGGAAGGAGCGCCGACAACCCTCCGCCCTAATCATCCAAAACTGCACCTTCAAGGCGGACACGGACCTCGCCCCAGTGAAAAATGTGTTCCGATCCTTCCTCGGGAGACCGTGGAAGGAATATTCAAGAACAATCATCATGGAATCATACATCGACGATGTGATTCATCCAGACGGGTGGCTGCCGTGGAGCGGCGACTGGGGGTTGAAGACATGCTTTTACACGGAGTTTCGGAACTACGGGCCAGGGTCGGACACGTCGAAGAGGGTGAAATGGAGGGGGGTGAAGGTTCTTACGCCGGCGCATGCGGTGGATTTCACGGCGAGCAGGTTTTTATTGGGAGATAGATGGATAAAGGCCACCGGAGTACCGTACGCGCCGGGGTTGACAATGAGAAGACACAGTGAGGTGTAG 1746 50.11 MAYDEDDSGNNKRYAIIGVSSMLLVAMVVAVTVGVNLNNDEAGGPTSGTKSNEISASVKAIKSICQTTDYKKDCVDSLKSNANNSADPHELVKAGFKAAMKLLQAAAKQSVTLQQLEQDPRASQALAGCKELMDFAIDELKFSMSRFGDFDTTHLDEMLIDLKIWLSATITYQETCLDSFENTTGDASEKMKKALKTSMRLSSNGLAMVTEISSMLTDLKVPGIGRRRLLDAPVVVGHEDYPEWADPGIRRLLAAKGNVKANFVVAVDGSGDFKSIQSAIDKVPKRKNNETFVIHIKEGVYKEYVTIKKSITHLMLIGDGPKKTIISGHKNFFDGITTFKTATVAVTAEHFRARDIGFVNTAGPHKHQAVALRVQADKAIFFNCEMHGYQDTLYVHTMRQFYRDCIVSGTIDFIFGDAAVVFQNCIFLIRKPLSNQQNIVTAHGRKERRQPSALIIQNCTFKADTDLAPVKNVFRSFLGRPWKEYSRTIIMESYIDDVIHPDGWLPWSGDWGLKTCFYTEFRNYGPGSDTSKRVKWRGVKVLTPAHAVDFTASRFLLGDRWIKATGVPYAPGLTMRRHSEV 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7823071 7825637 + CmaCh10G011330.1 Cma10g01133 302449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01133 581 ProSitePatterns Pectinesterase signature 1. 288 307 IPR018040 -
Cma10g01133 581 Gene3D - 256 573 IPR012334 -
Cma10g01133 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
Cma10g01133 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Cma10g01133 581 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Cma10g01133 581 Pfam Pectinesterase 263 559 IPR000070 GO:0030599|GO:0042545
Cma10g01133 581 PANTHER PECTINESTERASE 16 574 - -
Cma10g01133 581 CDD PMEI-like_3 63 214 - -
Cma10g01133 581 SUPERFAMILY Pectin lyase-like 260 572 IPR011050 -
Cma10g01133 581 PANTHER PECTINESTERASE 16 574 - -
Cma10g01133 581 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Cma10g01133 581 SMART PMEI_2 56 208 IPR006501 GO:0004857
Cma10g01133 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 211 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02176 Cma-Chr4:15218549 Cma10g01133 Cma-Chr10:7823071 1.87E-162 dispersed
Cma10g01133 Cma-Chr10:7823071 Cma11g01192 Cma-Chr11:7073950 0 dispersed
Cma10g01133 Cma-Chr10:7823071 Cma08g01239 Cma-Chr8:7592616 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01133 K01051 - csv:101207393 904.434