Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01145 ATGAGTCAGACAGAAGTATCAAGGATTAAGCCCCCTCTCGTTCCGCTCGCTACTTTGATCGGTCGCGAGCTGAGGAACGAGAAGGTTGAGAAACCTTTTGTGAAGTATGGACAGGCTGCTTTGGCAAAGAAAGGGGAGGACTACTTTCTGATCAAATTAGATTGCCACCGTATTCCTGGGAACACTTCCACCACGTTTTCTGTCTTTGCGATTTTTGATGGACATAATGGCATTTCAGCGGCTATTTTTGCTAAGGAACATTTATTGGGTAATGTCCTAAGTGCAATTCCTCAAGGGGTCAGTCGAGAAAAATGGCTTCAAGCCCTTCCTCGAGCACTAGTTGCTGGTTTTGTTAAAACTGACATAGAGTTTCAGCAGAAAGGGGAAACTTCTGGGACTACTGTTACATTTGTTGTGATTGATAAGTGGACTGTTACCGTTGCATCCGTGGGAGATTCACGATGCATATTAGACACCCAAGGAGGTGTGGTTTCTCTATTGACAGTTGATCATAGGCTGGAGGAAAACGAGGAAGAGAGGGAACGTGTAACTGCAAGTGGTGGCGAGGTTGGGAGGCTCAATGTTTTTGGCGGGAATGAGGTCGGTCCTCTCCGCTGCTGGCCCGGTGGCTTATGTCTTTCTAGGTCCATTGGTGATACAGATGTAGGAGAATATATTGTCCCAATACCACATGTTAAGCAAGTGAAGGAGGCTTTACGGTCAAGGGGGTTGAAGGATGATACAACTTGCTTAGTTGTTGATATTATCCCATCCGATCAACCTATATTATTACCATCAACTCCAAGGAAGAAGCAGAATGTGCTCACTTCTCTCTTTGGTAAATCTGCCAACAAACTTTCTGCTGTTGGAGTTGTGGAGGAATTGTTTGAAGAAGGCTCTGCTATGCTTTCTGAAAGGTTAGGGAAAGATTTTCCTTCGGATCCAAACTCAGGGATCTTCAAATGTGCAGTCTGTCAAGCGGATCAACCCGCGAATGAAAATTTGTCGATGAATTCGGGGCCGTTCTTTTCACCGTCGTCAAAGCCATGGGAAGGTCCATTCCTCTGTGCAAAGTGTAGAAGAAAGAAAGACGCCATGGAAGGGAAAAGGCCAATAAAACCTACAATAACTGTTTAG 1137 45.12 MSQTEVSRIKPPLVPLATLIGRELRNEKVEKPFVKYGQAALAKKGEDYFLIKLDCHRIPGNTSTTFSVFAIFDGHNGISAAIFAKEHLLGNVLSAIPQGVSREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDKWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKEALRSRGLKDDTTCLVVDIIPSDQPILLPSTPRKKQNVLTSLFGKSANKLSAVGVVEELFEEGSAMLSERLGKDFPSDPNSGIFKCAVCQADQPANENLSMNSGPFFSPSSKPWEGPFLCAKCRRKKDAMEGKRPIKPTITV 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8101019 8105465 + CmaCh10G011450.1 Cma10g01145 302461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01145 378 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 236 - -
Cma10g01145 378 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 235 377 - -
Cma10g01145 378 Gene3D - 40 260 IPR036457 -
Cma10g01145 378 SMART PP2C_4 23 253 IPR001932 -
Cma10g01145 378 PANTHER ALPHABET, ISOFORM E-RELATED 235 377 - -
Cma10g01145 378 PANTHER ALPHABET, ISOFORM E-RELATED 2 236 - -
Cma10g01145 378 ProSiteProfiles PPM-type phosphatase domain profile. 32 378 IPR001932 -
Cma10g01145 378 SUPERFAMILY PP2C-like 43 255 IPR036457 -
Cma10g01145 378 CDD PP2Cc 43 236 IPR001932 -
Cma10g01145 378 Pfam Protein phosphatase 2C 63 236 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01145 Cma-Chr10:8101019 Cma11g01247 Cma-Chr11:8283532 0 dispersed
Cma10g01145 Cma-Chr10:8101019 Cma18g01003 Cma-Chr18:8424972 2.72E-179 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01145 - - csv:101219622 693.73