Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01147 ATGGCGTCTTTCATAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCACGATCTTATCACTTCAAAGAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTAGCCAAGCTCAAGCTTTAGAAGAAGCTCTGGATGTTGATGATTTGGAAGCTGATAAAAGGCCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAGAAGGGAAAGGATAGATCTGATCGTGAACTTGTAACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGTACAGTTCTTGAGATACTTAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGACGTATAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAAAGAGATCGACCTGACATTTCTACTCCAGAGACTTTGCAGTTGTACCTTGACACTAGATTTGAACAACTGAAAGTTGCCACAGAGCTGGAGCTCTGGCAGGAAGCTTTTCGTTCGGTAGAAGATATTCATGGTTTGATGTGCATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTTTATTATGTCAAATTAACAGAGATATTCTGGATATCGAAGAGCAATCTTTATCATGCCTATGCTTGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATTTAAGCCAGAAGGATTTGCAGCTGATAGCTTCATCTGTTCTTTTAGCAGCTCTTGCGGTGTCCCCCTATGACTCTAAACACGGTGCCTCTCATTTAGAACTCGAACATGAGAAAGAGCGGAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGACTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGATCGAATCTTCTTTCTGAACTGGTGTCTAAGGGAGTCCTGAGCTGCTCAAATCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCTTTACTAAACAAAATATCAAAGCTTGGAGGCAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAGTATGTTCCGGCTCTTGAAAAACTTGCTACCCTGAGGTTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCTCAGATGATCCCATTTTTTGATTTCTCGGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCAAGGAACATTGTGTTATTTGGAACTTTGGGTATTGAATCAGATGGGCTTCGGGACCACCTGGCTGTTCTTGCTGAATCCTTAAACAAAGCTAGAGCTATGATCTATCCTCCAGTTAGGAAAGTATCAAAAACAGGTGAGATACTGCCTGATTTAGCAGATATTGTTGATAAAGAACACAAGAGGCTGCTTGCTCGGAAATCAATAATAGAGAAAAGGAAGGAAGAGCAGGAACGGCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGGAGGTTAAAATTACTGAAGATAACTGAAGAGGCTGAGCAGAAGCGCCTAGCTGCAGAATATGAACAAAGGAAAAACCAACGCCTGCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCGCAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCCGTTCTTGACTCTGAAAAGATGACGAAACAAACTTTAATGCAATTGGCCCTTACGGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTGCAAAAGCTAGCCAAAACTATGGATTATCAAGAAAGGGCAAAAAGAGAGGAGGCTGCAACTTTAATTGAAGCTGCATTTCAGCAACGTTTGCTCGAAGAGCGAATGATTCATGAACGCGATCAACAGCTGGAGGTTGAGTTAAGCAAACAACGTCACGAAGGTGATCTCAAGGAGAAGAATCGATTGGCTAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTCATTAATCTTCGCCAAGAGGAGTTCAGCAGACGCAGAGTTGAGAGAGAAGAACAAATCAGGCAAATAATTCATGCTCGGAAAGCAGAAAGAGAGGCTAAGAGGAAGAAAATCTTTTATGTAAGGCGTGAGGAGGAGAGGATTAGAATACTACGCGAAGAGGAGGAAGCACGCAAACGTGAAGAGGCCGAGAGGAGAAAGAGGGAAGAGGCTGAACGCAAGGCTAAATTGGATGAGATTGCCGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAGGAAAGGCGGCGGAAAGAAATGCTGTTTGGTGGTGGGGCACCAGCTGATGCACCTTCTAGACCTTATGTTGCTCCTGTTTCTCAACCTCTGGAGTCCGGGGCTGCTGCTCCTGCTGCTGCCGCCGCCCCAGCCTCAGCCCCAGCGAAGTATGTGCCTTCGTTTCGACGTACTGAAAGCTCTAGCCCTAATGCACCACCACCTGAATCTGATCGATGGGGAAGCAGCAGGTCCGATAATCGACCATCTCAACCAGACAGCTGGCGCCGTGATGAACGCAGATCTGCTTTTGGAAGTTCAAGGTCGTCCTGGTCGTCATCCCGAGGTCCTAATCGTGGTAGCTCGGATCACTGA 2907 43.55 MASFIKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKTYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDISTPETLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISKSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRSNLLSELVSKGVLSCSNQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVLFGTLGIESDGLRDHLAVLAESLNKARAMIYPPVRKVSKTGEILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKMTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYQERAKREEAATLIEAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLARMLESKKIFQERVINLRQEEFSRRRVEREEQIRQIIHARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERRRKEMLFGGGAPADAPSRPYVAPVSQPLESGAAAPAAAAAPASAPAKYVPSFRRTESSSPNAPPPESDRWGSSRSDNRPSQPDSWRRDERRSAFGSSRSSWSSSRGPNRGSSDH 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8114322 8123289 - CmaCh10G011470.1 Cma10g01147 302463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01147 968 MobiDBLite consensus disorder prediction 906 933 - -
Cma10g01147 968 Gene3D UVR domain 217 268 - -
Cma10g01147 968 MobiDBLite consensus disorder prediction 815 968 - -
Cma10g01147 968 MobiDBLite consensus disorder prediction 934 948 - -
Cma10g01147 968 Pfam PCI domain 373 509 IPR000717 -
Cma10g01147 968 Coils Coil 603 649 - -
Cma10g01147 968 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cma10g01147 968 Coils Coil 799 858 - -
Cma10g01147 968 Coils Coil 732 752 - -
Cma10g01147 968 SMART PINT_4 441 532 IPR000717 -
Cma10g01147 968 Coils Coil 561 600 - -
Cma10g01147 968 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 943 IPR027512 GO:0005852
Cma10g01147 968 MobiDBLite consensus disorder prediction 815 861 - -
Cma10g01147 968 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 910 IPR027512 GO:0005852
Cma10g01147 968 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Cma10g01147 968 Coils Coil 669 696 - -
Cma10g01147 968 Coils Coil 93 120 - -
Cma10g01147 968 Gene3D - 362 494 - -
Cma10g01147 968 Gene3D - 269 343 - -
Cma10g01147 968 MobiDBLite consensus disorder prediction 949 968 - -
Cma10g01147 968 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 910 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01147 Cma-Chr10:8114322 Cma11g01248 Cma-Chr11:8299443 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01147 K03254 - csv:101209344 1502.65