Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01149 ATGCTCGCCCAACAAGAAAGGGACCCAGGAGGTGTGGAATCGACTGTTATAAAGAAACCGGCAAGAATCGGAGCCCAGCTGCTTCCATTTATTCCGGTTGGTTTCAGCCGTTTGTCTCTCTCTCCGCCGCCTTGGGTCAACCGGATTTCGCCGGAGTTTCATAGTTCCGGTCAATGTTTCAGATTCCGGTGCTCTAGCTTCCATTTTCCTGTTCCAGTTCGTGTTCTGTTCATTTTCCCGGAAAATCTAAGAACTCAGGGAAGAACGACGAGTACACGAAACCGACCATACCTCAAAAAGGCGATGGAGCACTTGTTCATGAAGCTCATGAAGCTCAAGAAATGGAAGAACTCTGAAAATGCTTCTGCTGCTGAAGCAATGGCAAAGTCTGCAAAGAAGAAGGATTTGATCATTCATGGCTCGGGGAGTATGCATATCGACGGTTCGAGCAACTTCGTCTCAAGTTTCTCGAAGCGGGGTGAGAAGGGTATCAATCAGGACTGCTGCATTGTGTGGGAGGAATTTGGATGTCAAAAGGATATGATGTTTTGTGGAGTTTTTGATGGGCATGGACCATGGGGCCATTTTGTTGCAAAGAAGGTTAGAGAATCAATGCCAATAGCTTTGCTCTACAATTGGCAAGAAGCACTTGTTCAAGCTTCTCTTCACCCACATTTGGAACTCAACTTAGCCAAAACACATCTAAAGTTCAATTTATGGGAGCATTCTTATGAACAAGCTTGTGCTATGGTGGATGGAGAACTCGAACGACACCGTAAAATCGACACGTTTCATAGTGGAACGACGGCACTTTCCATCGTTCGACAAGGTGATACAATTATCATTGCGAACCTCGGTGACTCTCGGGCCGTGTTAGCTACAACTTCTAACGATAGAAACTCGATGCCGACACCAATTCAGCTCACTATCGATTTCAAGCCGAATCTACCTCAGGAGGCTGAGAGGATAGCACAATGCAGTGGGCGGGTTTTCTGCTTGCAAGATGAACCTGGGACGCACCGTATTTGGTTGCCGAATGGGAAAACGCCAGGGCTATCATTGTCGAGATCGTTCGGAGATTTTTGTGTTAAGCATTTTGGTCTCATTTCCATGCCTGATGTAACACAAAGAAGTGTAACCAACCAAGACTTGTTTGTTGTACTTGCAACAGATGGGATATGGGACGTGGTGTCGAATCAAGAGGCGGTACAAATCGTACATTCGAGTGTCAATAGAGAAAAATCAGCTCGACGTCTGGTTGATTATGCTACCGGTGCATGGAAGCGGAGGAGGCCGGGAATTGCAGCGGATGACATGTCGGTTGTCGTCCTCTTTCTCCATTCTTCACCTTTGCATCATCAACCTCTTGCTCTGATGTAG 1380 46.67 MLAQQERDPGGVESTVIKKPARIGAQLLPFIPVGFSRLSLSPPPWVNRISPEFHSSGQCFRFRCSSFHFPVPVRVLFIFPENLRTQGRTTSTRNRPYLKKAMEHLFMKLMKLKKWKNSENASAAEAMAKSAKKKDLIIHGSGSMHIDGSSNFVSSFSKRGEKGINQDCCIVWEEFGCQKDMMFCGVFDGHGPWGHFVAKKVRESMPIALLYNWQEALVQASLHPHLELNLAKTHLKFNLWEHSYEQACAMVDGELERHRKIDTFHSGTTALSIVRQGDTIIIANLGDSRAVLATTSNDRNSMPTPIQLTIDFKPNLPQEAERIAQCSGRVFCLQDEPGTHRIWLPNGKTPGLSLSRSFGDFCVKHFGLISMPDVTQRSVTNQDLFVVLATDGIWDVVSNQEAVQIVHSSVNREKSARRLVDYATGAWKRRRPGIAADDMSVVVLFLHSSPLHHQPLALM 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8131534 8142179 - CmaCh10G011490.1 Cma10g01149 302465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01149 459 SMART PP2C_4 145 444 IPR001932 -
Cma10g01149 459 CDD PP2Cc 151 446 IPR001932 -
Cma10g01149 459 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 108 454 - -
Cma10g01149 459 ProSiteProfiles PPM-type phosphatase domain profile. 152 446 IPR001932 -
Cma10g01149 459 PANTHER ALPHABET, ISOFORM E-RELATED 108 454 - -
Cma10g01149 459 Gene3D - 144 448 IPR036457 -
Cma10g01149 459 Pfam Protein phosphatase 2C 174 423 IPR001932 -
Cma10g01149 459 SUPERFAMILY PP2C-like 150 447 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01149 Cma-Chr10:8131534 Cma12g01048 Cma-Chr12:8302692 2.88E-165 dispersed
Cma10g01149 Cma-Chr10:8131534 Cma05g01091 Cma-Chr5:8604749 7.33E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01149 - - csv:101205485 590.497