Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01183 ATGGATAAACGGAGTTACAGCAGTAGACTGGAAACAAACAACCGAAATAAAGCCTATGCAAGGGAGCAGGATTCTCTTGGTGATGACTTCATAGATGATTTTCGCTTGCCCATCAACCATAGACCAACAGAAAATGTTGATCTTGATAATGTGGAACAAGCATCGTTGGACACTCAATTAACTTCATCAAATGTGGGCTATAGGCTTCTCCAGAAGATGGGCTGGAAAGGGAAGGGACTAGGAAAGGACGAGCAAGGAATTATTGAGCCCATTAAATCTGGAATTAGAGATCCCAAACTAGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAGGAAAACATCCAGCGGAAAAAACTTGATGTTGAGATGGAAGAGACAGAAGCAGATGTGAAAAAACGGGAGGGGACCATCAACTTTTGGAAGGTCTTCAGATTTTCCTGCAGTTTTTATTACCTGGTGGCTTCTACTGCCCGCTTCGTGCACATTATTAAAATCCAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTTAAAGAAATACGCAAGGTTTTCTATTGTGATCTCTGCAACAAACAGTACAAGTTGGCTATGGAATTTGAAGCGCATCTCAGCTCATATGATCATAATCATAGAAAGCGGTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGAGATGACAGAAACAAGCGGGAACAGCAACGTGAAGAGAGAGAGATGGCAAAATTTGCTCAAATTGCGGATGCCCGTAAGAAGGAGCAGCAAATGCTGGAGCAACAAGAAAGATCAGCCAAGGCGCCTGCTTCTACTGAAATTAGAAATGCTACATCACTTGCAGATCAGGATCAGCGGAAAACATTAAAATTTGGATTCTCTTCTAAAGGTGGCACCTCGAAGAAGATTTTTGGTGGAGCCACAAAGAAACCTAAAGTAGTAGCCCCTGTAGCTTCAGTTTTCGGGAATGATAGTGATGAGGAATAG 999 41.94 MDKRSYSSRLETNNRNKAYAREQDSLGDDFIDDFRLPINHRPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKDEQGIIEPIKSGIRDPKLGIGKQEEDDFFTAEENIQRKKLDVEMEETEADVKKREGTINFWKVFRFSCSFYYLVASTARFVHIIKIQVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADARKKEQQMLEQQERSAKAPASTEIRNATSLADQDQRKTLKFGFSSKGGTSKKIFGGATKKPKVVAPVASVFGNDSDEE 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8616148 8619786 - CmaCh10G011830.1 Cma10g01183 302499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01183 332 Pfam G-patch domain 63 103 IPR000467 GO:0003676
Cma10g01183 332 MobiDBLite consensus disorder prediction 222 277 - -
Cma10g01183 332 Pfam Zinc-finger double-stranded RNA-binding 189 216 IPR022755 -
Cma10g01183 332 ProSiteProfiles G-patch domain profile. 62 107 IPR000467 GO:0003676
Cma10g01183 332 SMART G-patch_5 60 105 IPR000467 GO:0003676
Cma10g01183 332 MobiDBLite consensus disorder prediction 222 265 - -
Cma10g01183 332 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 7 332 - -
Cma10g01183 332 ProSitePatterns Zinc finger C2H2 type domain signature. 191 213 IPR013087 -
Cma10g01183 332 SUPERFAMILY beta-beta-alpha zinc fingers 187 219 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00482 Cma-Chr2:2542751 Cma10g01183 Cma-Chr10:8616148 6.68E-07 dispersed
Cma10g01183 Cma-Chr10:8616148 Cma18g00819 Cma-Chr18:7145954 4.60E-08 dispersed
Cma10g01183 Cma-Chr10:8616148 Cma17g00943 Cma-Chr17:7046628 2.76E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01183 - - cmax:111467909 565.459