Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01184 ATGACAAGGAAGAAAGTGAAGCTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCGACGTTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTGAGTGAATTGAGCACGCTTTGCGGGATTGAGGCATGCGCGATCGTGTTTAGCCCCTATGATGCTCAGCCTGAGCTGTGGCCTTCCCCCATCGGCGTCCAGCGCGTTCTCTCCCAGTTCAAGAAGATGCCAGAGATGGAGCAGAGCAAGAAAATGGTGAACCAGGAGACGTTTCTGCGGCAGAGGATCGCCAAGGCCAACGACCAACTGAAGAAGATGAGAAAGGACAACCGGGAGAAAGAGATGACGCGGCTTATGTTTCAAAGCCTCACCGCTGCCAAAGGCCTTCATGCTCTCAACATGCTCGACTTGAACGACCTCACTTGGCTCATCGATCAAAACCTCAAAGACATTACTAAACGCATCGACTCCCTCAAGAAGCCTCCGCCCCGCTCTCAGCCACACCCTCACCCTCACCCTCAGCCGCCTCCTCCTCCGCAGACGGCCGCCTGGCTTATGGAGCTTGTCAGCCCTCAGGACCAAATGGGGTTCGTGGGGGATGACATGCTCTTGCCCTTCGGGGATCAAACTTATAGCCATAATAATGCGATGTGGTCAAATGCCTTTTTCCCTTAG 669 53.51 MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPRSQPHPHPHPQPPPPPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFFP 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8702422 8703183 - CmaCh10G011840.1 Cma10g01184 302500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01184 222 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cma10g01184 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 MobiDBLite consensus disorder prediction 162 179 - -
Cma10g01184 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 - -
Cma10g01184 222 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 MobiDBLite consensus disorder prediction 154 179 - -
Cma10g01184 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cma10g01184 222 Coils Coil 87 114 - -
Cma10g01184 222 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cma10g01184 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01184 - - - csv:101203059 386.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00533 Cma-Chr6:2510739 Cma10g01184 Cma-Chr10:8702422 1.55E-44 dispersed
Cma10g01184 Cma-Chr10:8702422 Cma13g00394 Cma-Chr13:4498887 3.14E-69 dispersed
Cma10g01184 Cma-Chr10:8702422 Cma16g00281 Cma-Chr16:1313922 1.01E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g25 . . . . . . . . Cmo10g01262 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00024 . . . . . . . . . . . . . . Cma10g01184 . Car10g01041 . . . . . . . . . . Cla03g01710 Cam03g1800 Cec03g1848 Cco03g1853 Clacu03g1822 Cmu03g2370 Cre03g2051 . Csa01g02690 . Cme02g00013
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g00425 . 4 160 Type I MADS-box Gene Family AT2G24840 53.8 6.5e-38 155.2
Cma04g00425 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 3.5e-48 189.5
Cma16g00680 . 1 230 Type I MADS-box Gene Family AT1G77950 51.4 1.2e-54 210.7
Cma10g01184 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.6e-53 204.9
Cma13g00394 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 2.5e-44 176.8
Cma04g00425 . 4 160 Type I MADS-box Gene Family AT2G24840 53.8 6.5e-38 155.2
Cma04g00425 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 3.5e-48 189.5
Cma16g00680 . 1 230 Type I MADS-box Gene Family AT1G77950 51.4 1.2e-54 210.7
Cma10g01184 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.6e-53 204.9
Cma13g00394 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 2.5e-44 176.8
Cma04g00425 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 3.5e-48 189.5
Cma10g01184 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.6e-53 204.9
Cma13g00394 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 2.5e-44 176.8
Cma04g00425 . 4 160 Type I MADS-box Gene Family AT2G24840 53.8 6.5e-38 155.2
Cma16g00680 . 1 230 Type I MADS-box Gene Family AT1G77950 51.4 1.2e-54 210.7
Cma04g00425 . 1 165 Type I MADS-box Gene Family AT5G60440 61.3 3.5e-48 189.5
Cma10g01184 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.6e-53 204.9
Cma13g00394 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 2.5e-44 176.8
Cma04g00425 . 4 160 Type I MADS-box Gene Family AT2G24840 53.8 6.5e-38 155.2
Cma16g00680 . 1 230 Type I MADS-box Gene Family AT1G77950 51.4 1.2e-54 210.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35760 PF00319 SRF-TF 2.00E-18 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g01184 Cma_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0