Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01184 ATGACAAGGAAGAAAGTGAAGCTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCGACGTTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTGAGTGAATTGAGCACGCTTTGCGGGATTGAGGCATGCGCGATCGTGTTTAGCCCCTATGATGCTCAGCCTGAGCTGTGGCCTTCCCCCATCGGCGTCCAGCGCGTTCTCTCCCAGTTCAAGAAGATGCCAGAGATGGAGCAGAGCAAGAAAATGGTGAACCAGGAGACGTTTCTGCGGCAGAGGATCGCCAAGGCCAACGACCAACTGAAGAAGATGAGAAAGGACAACCGGGAGAAAGAGATGACGCGGCTTATGTTTCAAAGCCTCACCGCTGCCAAAGGCCTTCATGCTCTCAACATGCTCGACTTGAACGACCTCACTTGGCTCATCGATCAAAACCTCAAAGACATTACTAAACGCATCGACTCCCTCAAGAAGCCTCCGCCCCGCTCTCAGCCACACCCTCACCCTCACCCTCAGCCGCCTCCTCCTCCGCAGACGGCCGCCTGGCTTATGGAGCTTGTCAGCCCTCAGGACCAAATGGGGTTCGTGGGGGATGACATGCTCTTGCCCTTCGGGGATCAAACTTATAGCCATAATAATGCGATGTGGTCAAATGCCTTTTTCCCTTAG 669 53.51 MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPRSQPHPHPHPQPPPPPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYSHNNAMWSNAFFP 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8702422 8703183 - CmaCh10G011840.1 Cma10g01184 302500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01184 222 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cma10g01184 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 MobiDBLite consensus disorder prediction 162 179 - -
Cma10g01184 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 178 - -
Cma10g01184 222 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 MobiDBLite consensus disorder prediction 154 179 - -
Cma10g01184 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cma10g01184 222 Coils Coil 87 114 - -
Cma10g01184 222 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cma10g01184 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma10g01184 222 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00533 Cma-Chr6:2510739 Cma10g01184 Cma-Chr10:8702422 1.55E-44 dispersed
Cma10g01184 Cma-Chr10:8702422 Cma13g00394 Cma-Chr13:4498887 3.14E-69 dispersed
Cma10g01184 Cma-Chr10:8702422 Cma16g00281 Cma-Chr16:1313922 1.01E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35760 PF00319 SRF-TF 2.00E-18 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01184 - - csv:101203059 386.341