Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g01192 | ATGTTCCATCCGAAGAAAGCGTTGAGTATGAATTCTCACGAGAGAGGGGTGTGCGTACAAGGCGACTCTGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGTTGGACTGTCGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCAACCCCAAAGACCATCATGCGAGTTATGGGTGTAAAGGGTCTTACCCTTTACCACCTCAAGAGTCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAGTTCAATGATCATTCAATTAAGGATGGTATGCGAGCTTCAGGTCTAGAACTTCATCGAAACACGATTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCACGAACAATTAGAGGTGCAAAGACACCTGCAGTTGCGGATCGAGGCTCAAGGGAAATATATGCAGAGTATACTAGAGAAAGCTTGTCAAACCCTTGCTGGTGAAGACATGGCAGCTTCCGGGGGCTACAAGCTCATGCCTGGAATCCCAAGCAATAATAATCAACAAGGTGTTGGCGACATGGGCGGAGGTATCAAAGATTTTGGGACCCCTCTCGGCTTCCCTTCATTTCAAGACCTCAACCTCTATGGAGGCCACCAGCTGGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGCGGCCACCAGCAAACTACGGATCCGGAAAATATGCGTTGGACTGGCCGGATGATCTCCGGCTGCAAGGCATAGGAATGCCGCAGCAAGCAGATCATGAATTCAAAGACATTAGCATTGGTGCGACGCTGGCAGAAAGAGGTCATTTGGAGGAAATGTATGAGGCAAAGCCAGTGGGATCGGATGAGAGCATGCTAGGGGATCACAGGAAATATGATACCAATGACAATGCGTCCTTAAAGCTTCAGAGGCCGTCGCCCAGAAGGGCACCCCTTTCAGCAGAAACAGTCAACCAGTCTCTTACAAGCGCTCCGCAGGTCACACTTTCACCTTTTGGTTAA | 1083 | 49.95 | MFHPKKALSMNSHERGVCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTISSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGEDMAASGGYKLMPGIPSNNNQQGVGDMGGGIKDFGTPLGFPSFQDLNLYGGHQLDLQQNVDGFMPHNDSLLCLGKKKPRPPANYGSGKYALDWPDDLRLQGIGMPQQADHEFKDISIGATLAERGHLEEMYEAKPVGSDESMLGDHRKYDTNDNASLKLQRPSPRRAPLSAETVNQSLTSAPQVTLSPFG | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 8839571 | 8841837 | + | CmaCh10G011920.1 | Cma10g01192 | 302508 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g01192 | 360 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 29 | 89 | IPR017930 | - | |
Cma10g01192 | 360 | MobiDBLite | consensus disorder prediction | 304 | 324 | - | - | |
Cma10g01192 | 360 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 1 | 280 | IPR044848 | GO:0003700 | |
Cma10g01192 | 360 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 1 | 280 | - | - | |
Cma10g01192 | 360 | MobiDBLite | consensus disorder prediction | 339 | 360 | - | - | |
Cma10g01192 | 360 | Pfam | Myb-like DNA-binding domain | 35 | 83 | IPR001005 | - | |
Cma10g01192 | 360 | Gene3D | - | 31 | 89 | - | - | |
Cma10g01192 | 360 | MobiDBLite | consensus disorder prediction | 304 | 360 | - | - | |
Cma10g01192 | 360 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 32 | 87 | IPR006447 | GO:0003677 | |
Cma10g01192 | 360 | SUPERFAMILY | Homeodomain-like | 31 | 87 | IPR009057 | - | |
Cma10g01192 | 360 | Pfam | MYB-CC type transfactor, LHEQLE motif | 127 | 167 | IPR025756 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g01228 | Cma-Chr6:8190100 | Cma10g01192 | Cma-Chr10:8839571 | 8.19E-70 | dispersed | |
Cma10g01192 | Cma-Chr10:8839571 | Cma20g00290 | Cma-Chr20:1412786 | 8.02E-121 | dispersed | |
Cma10g01192 | Cma-Chr10:8839571 | Cma19g01121 | Cma-Chr19:9211380 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35762 | PF00249 | Myb_DNA-binding | 1.90E-06 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g01192 | - | - | csv:101217821 | 579.711 |