Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g01192 ATGTTCCATCCGAAGAAAGCGTTGAGTATGAATTCTCACGAGAGAGGGGTGTGCGTACAAGGCGACTCTGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGTTGGACTGTCGAGCTTCATGAGCGCTTTGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCAACCCCAAAGACCATCATGCGAGTTATGGGTGTAAAGGGTCTTACCCTTTACCACCTCAAGAGTCATCTCCAGAAATTTAGACTGGGAAAGCAGCCTCACAAGGAGTTCAATGATCATTCAATTAAGGATGGTATGCGAGCTTCAGGTCTAGAACTTCATCGAAACACGATTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCACGAACAATTAGAGGTGCAAAGACACCTGCAGTTGCGGATCGAGGCTCAAGGGAAATATATGCAGAGTATACTAGAGAAAGCTTGTCAAACCCTTGCTGGTGAAGACATGGCAGCTTCCGGGGGCTACAAGCTCATGCCTGGAATCCCAAGCAATAATAATCAACAAGGTGTTGGCGACATGGGCGGAGGTATCAAAGATTTTGGGACCCCTCTCGGCTTCCCTTCATTTCAAGACCTCAACCTCTATGGAGGCCACCAGCTGGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGCGGCCACCAGCAAACTACGGATCCGGAAAATATGCGTTGGACTGGCCGGATGATCTCCGGCTGCAAGGCATAGGAATGCCGCAGCAAGCAGATCATGAATTCAAAGACATTAGCATTGGTGCGACGCTGGCAGAAAGAGGTCATTTGGAGGAAATGTATGAGGCAAAGCCAGTGGGATCGGATGAGAGCATGCTAGGGGATCACAGGAAATATGATACCAATGACAATGCGTCCTTAAAGCTTCAGAGGCCGTCGCCCAGAAGGGCACCCCTTTCAGCAGAAACAGTCAACCAGTCTCTTACAAGCGCTCCGCAGGTCACACTTTCACCTTTTGGTTAA 1083 49.95 MFHPKKALSMNSHERGVCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTISSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGEDMAASGGYKLMPGIPSNNNQQGVGDMGGGIKDFGTPLGFPSFQDLNLYGGHQLDLQQNVDGFMPHNDSLLCLGKKKPRPPANYGSGKYALDWPDDLRLQGIGMPQQADHEFKDISIGATLAERGHLEEMYEAKPVGSDESMLGDHRKYDTNDNASLKLQRPSPRRAPLSAETVNQSLTSAPQVTLSPFG 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8839571 8841837 + CmaCh10G011920.1 Cma10g01192 302508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g01192 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Cma10g01192 360 MobiDBLite consensus disorder prediction 304 324 - -
Cma10g01192 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 280 IPR044848 GO:0003700
Cma10g01192 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 280 - -
Cma10g01192 360 MobiDBLite consensus disorder prediction 339 360 - -
Cma10g01192 360 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Cma10g01192 360 Gene3D - 31 89 - -
Cma10g01192 360 MobiDBLite consensus disorder prediction 304 360 - -
Cma10g01192 360 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Cma10g01192 360 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cma10g01192 360 Pfam MYB-CC type transfactor, LHEQLE motif 127 167 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01228 Cma-Chr6:8190100 Cma10g01192 Cma-Chr10:8839571 8.19E-70 dispersed
Cma10g01192 Cma-Chr10:8839571 Cma20g00290 Cma-Chr20:1412786 8.02E-121 dispersed
Cma10g01192 Cma-Chr10:8839571 Cma19g01121 Cma-Chr19:9211380 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35762 PF00249 Myb_DNA-binding 1.90E-06 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g01192 - - csv:101217821 579.711