Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00003 | ATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGAGGCGGCGGCGCATCCCTCCCAGCACCACTGCCGCCCTACTCGCTGCGGCCCAGGGAATTGGAACTGGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGGATCAGGTACTACACCGCCGCTAAAATTGCGGAGCTGGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGATATGATAAACAGCCTCTCTCATATTTTCCGGTGGGAACTTCTGGTAGGTGAGAGATACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTGTAGATGACGAGATGGATTCCTCCAGGCGCCGGCACCTCTTCTCCAATGACACCCATAACAACGTGGTGATGGTGATGGAGGAGGATCATCACGATGAAACTGAGGAGGGAGGTGGGGAGGAGGAGGATAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGGAAAAAGAACGGCCTTGACTATCTCTTCCACCTCTATGAGCAGTGTCGTGAGTTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGTCCCACTAAGGTGACAAACCAGGTGTTTAGATATGCGAAGAAGGTGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGCTATGCGTTGCATTGTCTGGACGAGGAAGCGTCCAACGCGTTGAGGAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTTTGGTAGCCACAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCCACTAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTGCCAAAGCCTCCACCTCCGCCGCCGTAAATCACTTGCCATTTTAA | 1008 | 53.77 | MDPEALSATLFKWDPRGMVGGGGGASLPAPLPPYSLRPRELELGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMINSLSHIFRWELLVGERYGIKAAVRAERRRVDDEMDSSRRRHLFSNDTHNNVVMVMEEDHHDETEEGGGEEEDNMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKVGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVATAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSAKASTSAAVNHLPF | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 11395 | 18321 | + | CmaCh11G000030.1 | Cma11g00003 | 302512 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00003 | 335 | PANTHER | PROTEIN LEAFY | 1 | 135 | IPR002910 | GO:0003677|GO:0006355 | |
Cma11g00003 | 335 | Pfam | Floricaula / Leafy protein SAM domain | 43 | 118 | IPR035079 | - | |
Cma11g00003 | 335 | Gene3D | Protein LEAFY | 161 | 329 | IPR038276 | - | |
Cma11g00003 | 335 | Pfam | DNA Binding Domain (C-terminal) Leafy/Floricaula | 160 | 322 | IPR035209 | GO:0003677 | |
Cma11g00003 | 335 | PANTHER | PROTEIN LEAFY | 142 | 335 | IPR002910 | GO:0003677|GO:0006355 | |
Cma11g00003 | 335 | MobiDBLite | consensus disorder prediction | 143 | 165 | - | - | |
Cma11g00003 | 335 | PANTHER | PROTEIN LEAFY | 142 | 335 | - | - | |
Cma11g00003 | 335 | PANTHER | PROTEIN LEAFY | 1 | 135 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00009 | Cma11g00003 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00009 | Cma-Chr10:30790 | Cma11g00003 | Cma-Chr11:11395 | 7.71E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35763 | PF17538 | C_LFY_FLO | 1.00E-107 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00003 | - | - | cmax:111484867 | 517.309 |