Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00003 ATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGAGGCGGCGGCGCATCCCTCCCAGCACCACTGCCGCCCTACTCGCTGCGGCCCAGGGAATTGGAACTGGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGGATCAGGTACTACACCGCCGCTAAAATTGCGGAGCTGGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGATATGATAAACAGCCTCTCTCATATTTTCCGGTGGGAACTTCTGGTAGGTGAGAGATACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTGTAGATGACGAGATGGATTCCTCCAGGCGCCGGCACCTCTTCTCCAATGACACCCATAACAACGTGGTGATGGTGATGGAGGAGGATCATCACGATGAAACTGAGGAGGGAGGTGGGGAGGAGGAGGATAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGGAAAAAGAACGGCCTTGACTATCTCTTCCACCTCTATGAGCAGTGTCGTGAGTTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGTCCCACTAAGGTGACAAACCAGGTGTTTAGATATGCGAAGAAGGTGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGCTATGCGTTGCATTGTCTGGACGAGGAAGCGTCCAACGCGTTGAGGAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTTTGGTAGCCACAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCCACTAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTGCCAAAGCCTCCACCTCCGCCGCCGTAAATCACTTGCCATTTTAA 1008 53.77 MDPEALSATLFKWDPRGMVGGGGGASLPAPLPPYSLRPRELELGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMINSLSHIFRWELLVGERYGIKAAVRAERRRVDDEMDSSRRRHLFSNDTHNNVVMVMEEDHHDETEEGGGEEEDNMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKVGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVATAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSAKASTSAAVNHLPF 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11395 18321 + CmaCh11G000030.1 Cma11g00003 302512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00003 335 PANTHER PROTEIN LEAFY 1 135 IPR002910 GO:0003677|GO:0006355
Cma11g00003 335 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Cma11g00003 335 Gene3D Protein LEAFY 161 329 IPR038276 -
Cma11g00003 335 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 160 322 IPR035209 GO:0003677
Cma11g00003 335 PANTHER PROTEIN LEAFY 142 335 IPR002910 GO:0003677|GO:0006355
Cma11g00003 335 MobiDBLite consensus disorder prediction 143 165 - -
Cma11g00003 335 PANTHER PROTEIN LEAFY 142 335 - -
Cma11g00003 335 PANTHER PROTEIN LEAFY 1 135 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00009 Cma11g00003 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00009 Cma-Chr10:30790 Cma11g00003 Cma-Chr11:11395 7.71E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35763 PF17538 C_LFY_FLO 1.00E-107 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00003 - - cmax:111484867 517.309