Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00003 ATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGAGGCGGCGGCGCATCCCTCCCAGCACCACTGCCGCCCTACTCGCTGCGGCCCAGGGAATTGGAACTGGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGGATCAGGTACTACACCGCCGCTAAAATTGCGGAGCTGGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGATATGATAAACAGCCTCTCTCATATTTTCCGGTGGGAACTTCTGGTAGGTGAGAGATACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTGTAGATGACGAGATGGATTCCTCCAGGCGCCGGCACCTCTTCTCCAATGACACCCATAACAACGTGGTGATGGTGATGGAGGAGGATCATCACGATGAAACTGAGGAGGGAGGTGGGGAGGAGGAGGATAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGGAAAAAGAACGGCCTTGACTATCTCTTCCACCTCTATGAGCAGTGTCGTGAGTTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGTCCCACTAAGGTGACAAACCAGGTGTTTAGATATGCGAAGAAGGTGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGCTATGCGTTGCATTGTCTGGACGAGGAAGCGTCCAACGCGTTGAGGAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTTTGGTAGCCACAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCCACTAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTGCCAAAGCCTCCACCTCCGCCGCCGTAAATCACTTGCCATTTTAA 1008 53.77 MDPEALSATLFKWDPRGMVGGGGGASLPAPLPPYSLRPRELELGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMINSLSHIFRWELLVGERYGIKAAVRAERRRVDDEMDSSRRRHLFSNDTHNNVVMVMEEDHHDETEEGGGEEEDNMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKVGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVATAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSAKASTSAAVNHLPF 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11395 18321 + CmaCh11G000030.1 Cma11g00003 302512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00003 335 PANTHER PROTEIN LEAFY 1 135 IPR002910 GO:0003677|GO:0006355
Cma11g00003 335 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Cma11g00003 335 Gene3D Protein LEAFY 161 329 IPR038276 -
Cma11g00003 335 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 160 322 IPR035209 GO:0003677
Cma11g00003 335 PANTHER PROTEIN LEAFY 142 335 IPR002910 GO:0003677|GO:0006355
Cma11g00003 335 MobiDBLite consensus disorder prediction 143 165 - -
Cma11g00003 335 PANTHER PROTEIN LEAFY 142 335 - -
Cma11g00003 335 PANTHER PROTEIN LEAFY 1 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00003 - - - cmax:111484867 517.309
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00009 Cma11g00003 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00009 Cma-Chr10:30790 Cma11g00003 Cma-Chr11:11395 7.71E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g12 . . . . . . . . . . Cma10g00009 Cma11g00003 Car10g00006 Car11g00003 . . Cpe04g01641 . . . . . . . Cla06g01788 Cam06g1986 Cec06g2036 Cco06g2044 Clacu06g1943 Cmu06g1883 Cre06g2694 . . . . . . . . . . . . . . . . . Cmo10g00007 Cmo11g00003 . . . . . Cpe18g00943 . . . . . . . . . . . . . . Lsi06g01688 Csa01g00005 Chy02g02708 Cme02g02117
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00009 CST 1 379 Orphan Transcription Factor Family AT5G61850 66.6 4.0e-122 435.6
Cma11g00003 CST 1 330 Orphan Transcription Factor Family AT5G61850 62.0 5.2e-114 408.7
Cma17g00607 . 1 167 Orphan Transcription Factor Family AT1G06040 67.8 1.8e-60 229.6
Cma08g00194 . 1 161 Orphan Transcription Factor Family AT1G06040 69.0 1.2e-59 226.9
Cma16g00426 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.5e-38 156.8
Cma04g00659 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 3.3e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35763 PF17538 C_LFY_FLO 1.00E-107 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00003 Cma_Chr11 FPKM 0.472174 0.723804 0.0 0.0 1.756983 1.114111 1.245784 0.186282 0.198254 0.0