Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00004 ATGGCGCAGGTTTCTCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCGCTGCCAGGCCAAGCCTTCCGACTTGGAGACGATCACTTGCAAAACTTGCGTCGCCCCTTGGCACGTCGGCTGTCTCTCAAATCCCCCTCAAATCCTGGCATCTACCCTTCAATGGGACTGTCCCGACTGTTCCCCCCCACCCGAAGATGCTTCCCTGCCTCCACCCGCTAGCTGTCCACTTCCCGTTACGCCTTCCAATGACCTGGTTACTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGCGAGAAGGCAAATAAGCGCCAGGAGCTCCTCAGTGGAAAGTCTCAGTCTGAGAAGGATGATCATGATGCCAACGAAAAAAGAGGGGACGATGTTTTGGATTTGTTCGACGAGAGATTGAAGTGCTCCTTTTGCATGCAGTTACCAGAAAGGCCCGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAGAACACTTGTGCAAAGTGTCGCTGCGTGATTCCCTCCAAAATGGCTAGCCACCCCCGTATTAATTCTACACTTGTAGTGGCCATACGTATGGCTAAAATGTCAAAATCAATTATTTCTGGAGGATCTCAGAAGGTTTATCATGTTGTCCACAATCTAAATAGGCCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCTTGCTGAAAATGATCCGGAGAGAAACCAGGGTGTTCTGGTTGGGGAATGTTGGGAGGATAGGTTAGAATGTCGCCAGTGGGGTGCTCACTTTCCACATGTTGCAGGCATAGCAGGGCAGTCAAATAACGGTGCACAATCAGTGGTACTTTCTGGTGGTTACCAAGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGAGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAGAAATCAAACAAAGCGCTACAAGTTAGTTGCTTGAATGGTTATCCTGTTAGAGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAAAAGGGGTTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGGTATTTGTTTGTTAGATGCGACAATGATCCTGCACCATGGACAAGTGACGAACATGGAGATCGACCTAGACCCTTACCTGCAATTCCAGAGTTAAAAAAAGCAACAGACATTACGGAGAGGAAGAAAGATCCTTCATGGGACTTTGATGAGAAAGATAGTCGGTGGAAGTGGAGCAAACCTCCACCAACGAGCAAGAAGTCAGTTGAAACCGAAGATTCTACTTCTGGGAAGAAGTCAAGGAGGAGAATGAGGCAGTCGCATAATATGAATGTTCGAGAAAGGTTACTGAAAGAATTTAGCTGCCTTATTTGCCGGGAGGTGATGAATCTGCCCATTACTACGCCTTGTGCCCATAACTTTTGTAAGTCATGTTTGGAAGGTGCTTTTGCGGGCAAGTCATTCTTGAGAGAGAGAAACAGTGGTGGACGGGCTCTTAGATCCCGGAAGAATGTCATGGCTTGCCCTTGTTGCCCGACGGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAATTGTTGGATGTGATCGAGTCGTTGAAAAGTAAGATTGAAGAAGCGGATGCATCTGAGAAGCCCTGTGAAGACGAGATAGAAGGGGAAGGGGAAGGGGAAGGGGAACAGGAAGAGGAGGGAAAAGATGGAAGCAACGGAAATGAAAGCAGCCGCCCTGTGGAAACAAGAAAGCGAGCAAAGGTGGTGGTTAATGGTGGGGAGGAAAATGATTCGCCGTCAAGCCCCGTCCACGTGGATGATTTGGAATGA 2007 47.14 MAQVSQLPCDGDGICMRCQAKPSDLETITCKTCVAPWHVGCLSNPPQILASTLQWDCPDCSPPPEDASLPPPASCPLPVTPSNDLVTAIRAIEADASLTDREKANKRQELLSGKSQSEKDDHDANEKRGDDVLDLFDERLKCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASHPRINSTLVVAIRMAKMSKSIISGGSQKVYHVVHNLNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPILAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCLNGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAIPELKKATDITERKKDPSWDFDEKDSRWKWSKPPPTSKKSVETEDSTSGKKSRRRMRQSHNMNVRERLLKEFSCLICREVMNLPITTPCAHNFCKSCLEGAFAGKSFLRERNSGGRALRSRKNVMACPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEADASEKPCEDEIEGEGEGEGEQEEEGKDGSNGNESSRPVETRKRAKVVVNGGEENDSPSSPVHVDDLE 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21237 28132 + CmaCh11G000040.1 Cma11g00004 302513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00004 668 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
Cma11g00004 668 SUPERFAMILY RING/U-box 133 189 - -
Cma11g00004 668 CDD RING-HC 142 180 - -
Cma11g00004 668 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Cma11g00004 668 SUPERFAMILY RING/U-box 507 595 - -
Cma11g00004 668 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 638 - -
Cma11g00004 668 SMART PHD_3 14 61 IPR001965 -
Cma11g00004 668 Pfam RING-type zinc-finger 514 546 IPR027370 -
Cma11g00004 668 MobiDBLite consensus disorder prediction 426 500 - -
Cma11g00004 668 Gene3D - 241 437 IPR036987 -
Cma11g00004 668 SMART ring_2 142 180 IPR001841 -
Cma11g00004 668 SMART ring_2 514 570 IPR001841 -
Cma11g00004 668 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Cma11g00004 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 209 IPR013083 -
Cma11g00004 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 601 IPR013083 -
Cma11g00004 668 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 638 IPR045134 -
Cma11g00004 668 SUPERFAMILY FYVE/PHD zinc finger 7 67 IPR011011 -
Cma11g00004 668 MobiDBLite consensus disorder prediction 99 129 - -
Cma11g00004 668 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Cma11g00004 668 Coils Coil 584 604 - -
Cma11g00004 668 MobiDBLite consensus disorder prediction 600 668 - -
Cma11g00004 668 MobiDBLite consensus disorder prediction 605 624 - -
Cma11g00004 668 MobiDBLite consensus disorder prediction 426 472 - -
Cma11g00004 668 Pfam SAD/SRA domain 273 421 IPR003105 -
Cma11g00004 668 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Cma11g00004 668 MobiDBLite consensus disorder prediction 625 650 - -
Cma11g00004 668 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Cma11g00004 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 61 IPR013083 -
Cma11g00004 668 SUPERFAMILY PUA domain-like 244 439 IPR015947 -
Cma11g00004 668 SMART G9a_1 265 422 IPR003105 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00004 Cma-Chr11:21237 Cma14g01850 Cma-Chr14:13168601 1.53E-23 dispersed
Cma04g01952 Cma-Chr4:10853398 Cma11g00004 Cma-Chr11:21237 0 transposed
Cma11g00004 Cma-Chr11:21237 Cma11g01555 Cma-Chr11:10112897 3.72E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00004 K10638 - csv:101220457 1118.99