Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00006 ATGGGTAACTGCTTCTCCGATGACGCCGCTGCCCGCTCTGCCGTTGGTGCTACTGTCTTCTCCCAAAATAATACTTCCAACGTCGCCGTAGATTGTTTCTTGTTGTCTCGGGGCTATCGTGGCCTCTATTCCCAGATCGAGATATCATTCTCTGCATCTAACTTGCGCGACCGTGATGTATGCTCCAAGAGTGATCCAATGCTGGTTGTCTACGCAAAAAGACGGGACGGATCTCTAGAAGAGCTTGACCGCACTGAAGTAGTTCAAAATTCATTAAATCCAAAATGGATCCATAAGCTTAATATTAACTATCAATTTGAGGTTGTGCAAACTTTGGTGTTCTTTGTGTATGACGTTGATACTCAATATCACAGCCTAGGAGTAAAGATGCTGAAGCTAGATGAACAGAAATATCTTGGTGAAGCAACCTGTGTACTATCTGAGATAGTTACCCAATCAGACAGGTCACTTACATTGAATCTAGTATATAGAGAAGAGTCAACCAGCTCTACTCATCCACACCACTGTGGAAAACTTACTGTTCATGCTGAGGAGTGTTTTAGCTCAAAGACCACAACAGAGATGATATTGAGGTGTTCAAACTTGGGACACAAGGATCTCTTCTCAAGAATTGACCCTTTTCTGGTTATTTCAAAAACTGTGGAGAGTAAGAGCTCCATTCCAGTTTGCAAAACTGAAGTAATAAAGAATGATTTGAATCCCACATGGAAGCCTGTGTTCCTGAATATGCAACAAGCTGGAAGCAAGGACAGCCCCTTAATAATAGAGTGTTTTAACTTCAATAGCAATGGAAGGCACGAGTTGATTGGAAAAGTTCAAAAGTCACTTGTGGAGTTGGAGAAGCTTTTTTTAAGTGGGGAGGGAGATAACTTATTCTCACTTCCTGCTGCTGGACATGATTACCATAACAAAGTACTAAAAAGCCAACTATTTGTGGACAAATTCACTGAGAGCGTCCAACAAACATTCCTTGATTACTTGGCTGGTGGCTATGAAATGAACTTCATGGTGGCTGTTGATTTCACGGCTTCAAATGGAAACCCTCGCCTTCCTGATTCCTTGCATTTCATTGATCCTTCAGGACGGCCAAATTCATACCAGCAAGCAATCATAGAAGTTGGAGAGGTATTGCAATTTTATGACTCAGATAAACGCTTTCCTGCCTGGGGGTTTGGAGCACGACCTATTGATGGTCCAGTCTCTCACTGTTTCAACCTAAATGGAAGTAGTCACTACTGTGAGGTTGAAGGAACTCAAGGAATTTTGATGGCATATACAAGTGCGCTCCATAATGTGTCTCTTGCAGGACCAACACTTTTTGGGCCTGTGATTAACAATGCTGCATTAATTGCCAGTCAGTCTCTTGCAAATGGTGGGCGGAAGTACTTTGTTTTGCTAATAATCACTGATGGAGTGGTAACAGATCTCCAAGAAACTAAAGATGCTCTTGTGAAGGCATCTGATCTGCCACTGTCTATTCTCATTGTTGGAGTGGGTGGAGCTGACTTTAAAGAAATGGAGGTTTTAGATGCGGATAAGGGAGGGAGACTTGAAAGCGCAACTGGACGTGTTGCTTCACGAGATATAGTCCAGTTCGTTCCATTCCGTGATGTACAAGGTGGAGAGATTTCTGTTGTTCAAGCATTGCTAGCAGAAGTACCTCATCAATTTCTGACCCATGTTCGAAGTAGAGATGTTCAACCAAATTCTAGATCAAGCTGA 1743 42.57 MGNCFSDDAAARSAVGATVFSQNNTSNVAVDCFLLSRGYRGLYSQIEISFSASNLRDRDVCSKSDPMLVVYAKRRDGSLEELDRTEVVQNSLNPKWIHKLNINYQFEVVQTLVFFVYDVDTQYHSLGVKMLKLDEQKYLGEATCVLSEIVTQSDRSLTLNLVYREESTSSTHPHHCGKLTVHAEECFSSKTTTEMILRCSNLGHKDLFSRIDPFLVISKTVESKSSIPVCKTEVIKNDLNPTWKPVFLNMQQAGSKDSPLIIECFNFNSNGRHELIGKVQKSLVELEKLFLSGEGDNLFSLPAAGHDYHNKVLKSQLFVDKFTESVQQTFLDYLAGGYEMNFMVAVDFTASNGNPRLPDSLHFIDPSGRPNSYQQAIIEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGTQGILMAYTSALHNVSLAGPTLFGPVINNAALIASQSLANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGGRLESATGRVASRDIVQFVPFRDVQGGEISVVQALLAEVPHQFLTHVRSRDVQPNSRSS 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 31149 36904 - CmaCh11G000060.1 Cma11g00006 302515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00006 580 CDD C2A_Copine 44 161 - -
Cma11g00006 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 50 163 IPR035892 -
Cma11g00006 580 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 576 - -
Cma11g00006 580 ProSiteProfiles VWFA domain profile. 341 560 IPR002035 -
Cma11g00006 580 SMART VWA_4 339 536 IPR002035 -
Cma11g00006 580 ProSiteProfiles C2 domain profile. 175 299 IPR000008 -
Cma11g00006 580 SMART C2_3c 196 298 IPR000008 -
Cma11g00006 580 SMART C2_3c 45 158 IPR000008 -
Cma11g00006 580 CDD vWA_copine_like 310 564 IPR010734 -
Cma11g00006 580 Gene3D C2 domain 194 310 IPR035892 -
Cma11g00006 580 Gene3D C2 domain 46 193 IPR035892 -
Cma11g00006 580 Pfam Copine 360 575 IPR010734 -
Cma11g00006 580 Pfam C2 domain 51 155 IPR000008 -
Cma11g00006 580 Pfam C2 domain 195 285 IPR000008 -
Cma11g00006 580 PANTHER COPINE 1 576 IPR045052 GO:0005544
Cma11g00006 580 SUPERFAMILY vWA-like 338 527 IPR036465 -
Cma11g00006 580 ProSiteProfiles C2 domain profile. 24 159 IPR000008 -
Cma11g00006 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 196 286 IPR035892 -
Cma11g00006 580 CDD C2B_Copine 194 288 IPR037768 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00006 - - - csv:101215724 1037.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00011 Cma11g00006 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00006 Cma-Chr11:31149 Cma15g00367 Cma-Chr15:1681009 7.55E-24 dispersed
Cma05g00735 Cma-Chr5:4173390 Cma11g00006 Cma-Chr11:31149 0 transposed
Cma10g00011 Cma-Chr10:35998 Cma11g00006 Cma-Chr11:31149 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00006 Cma_Chr11 FPKM 9.546925 9.464107 8.58304 7.563359 19.072439 18.365685 18.888201 5.882364 5.920928 6.024908