Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00007 ATGGCTAGAGTTCTTGTTCAGTCCACAAATATTCCTGGTCTGGTCGGTGGAAGGAAGAATGGCCTATCAAGAGGATCAGTAAATGTAAAACGGGCTGTTAGAATGATGGCCAGCGTACATGCACCTGGTTCGAGAATAAGAAGTTTCTCTGGACTTAGAGGATTTAATTCTTTGGATAACATGTTGAGAACTAGACAGGATTTTCATTCCAAGGTGGCCATTACAATCTCTTCTAGGCGACGAAAGGCTACCAGATGTGTCCCAAGAGCCATGTTTGAGCGATTCACAGAAAAGGCAATTAAAGTTATCATGCTTGCCCAGGAGGAAGCGAGGCGGCTTGGTCACAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATTGGCGAAGGTACTGGTATCGCTGCCAAGGTTCTTAAATCCATGGGAATTAATCTTAAAGATGCGCGCGTGGAGGTGGAGAAGATAATTGGTCGGGGCAGCGGGTTTGTTGCTGTAGAAATTCCCTTCACTCCTCGTGCAAAGCGTGTTTTGGAACTTTCTCTCGAGGAAGCTCGCCAACTTGGTCACAATTATATTGGATCAGAGCACTTGCTTCTGGGTCTACTTCGTGAAGGTGAGGGCGTTGCAGCTCGTGTAATTCGAATGGTTGGTGAGAGCACAGAGGCTGTTGGTGCTGGTGTTGGAGGAGGGAGCAGTGGGAACAAGATGCCAACTCTGGAAGAGTACGGCACAAACTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTTGTTGGAAGGCAGCAGCAAATTGAACGTGTAACACAAATTTTGGGCCGGCGAACAAAAAATAATCCTTGCCTCATTGGTGAGCCTGGTGTTGGGAAAACTGCTATTGCAGAAGGCCTGGCACAAAGGATTGCTAATGGGGATGTTCCTGAAACAATCGAAGGAAAGAAGGTCATAACCCTGGATATGGGACTTCTCGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTTATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTCATTGATGAGGTGCACACATTAATTGGAGCAGGGGCTGCAGAAGGAGCTATCGATGCGGCAAATATATTGAAACCTGCCCTTGCAAGAGGTGAACTGCAGGTGTGCATTGGAGCCACAACATTGGATGAATACAGGAAGCACATTGAGAAAGATCCGGCCTTAGAAAGGAGATTTCAGCCTGTCAAAGTGCCGGAACCGTCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGAGAGCGCTATGAAATCCACCACAAACTTCGATACACGGATGAAGCATTAGTAGCTGCTGCACAACTGTCATACCAGTACATCAGTGATCGATTCTTGCCTGATAAGGCAATCGACTTGGTTGATGAAGCTGGTTCTCGGGTTCGCCTTCGTCATGCGCAACTACCTGAGGAAGCTAGAGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAGGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGAATTTAAGACTAAGATCTCTGCTCTAGTTGATAAGGGCAAGGAGATGAGCAAGGCTGAAAGTGAGGCAGGAGATGTTGGCCCTGTTGTGACCGAAGTTGATATTCAGCATATTGTTTCCTCCTGGACAGGCATTCCTGTCGAGAAAGTATCTACTGACGAATCTGACCGCCTCCTCAAAATGGAAGAGACCCTCCATAAGAGAGTCATTGGTCAAGATGAAGCAGTTAAAGCCATCAGCCGTGCCATACGTCGAGCTCGTGTTGGTCTCAAGAATCCCAATCGTCCAATTGCAAGCTTTATATTTTCTGGTCCAACGGGTGTTGGTAAATCTGAGTTGGCAAAAGCATTGGCTGCGTACTATTTTGGCTCTGAAGAAGCAATGATTCGCCTTGACATGAGTGAATTCATGGAAAGGCATACCGTCTCCAAGCTCATTGGTTCCCCTCCTGGTTATGTTGGTTACACAGAGGGTGGTCAATTAACTGAGGCTGTTCGTCGTCGTCCATACACAGTGGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAATATGATGCTTCAAATTTTGGAGGATGGAAGGTTGACGGATAGCAAGGGCAGAACTGTAGACTTCAAGAATACACTTTTGATAATGACATCAAACGTGGGAAGCAGTGTTATAGAGAAGGGAGGTCGCAGAATAGGGTTTGACCTTGATTATGATGAGAAGGATAGTAGTTATAACCGAATCAAGAGCTTGGTGACAGAGGAACTGAAACAGTACTTCAGGCCTGAGTTTCTGAATAGGTTGGATGAGATGATTGTCTTCCGTCAGCTCACTAAGCTGGAGGTGAAGGAGATTGCGGATATAATGCTGAAGGAGGTATTTGATAGATTAAAAGCAAAAGAAGTTGAACTTCAAGTGACAGAGAGATTTAGAGATAGGGTGGTTGAGGAGGGATATAACCCAAGCTATGGTGCGAGGCCATTAAGAAGGGCAATCATGAGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTGGCGAGGGAGATCAAGGAGGGCGACTCAGTAATAGTGGATGTTGATTCAGATGGAAATGTGACAGTGCTCAACGGCAGCAGTGGTGCCCCCGAGTCCTTGCCTGATGCTATCACCGTGTAA 2727 45.87 MARVLVQSTNIPGLVGGRKNGLSRGSVNVKRAVRMMASVHAPGSRIRSFSGLRGFNSLDNMLRTRQDFHSKVAITISSRRRKATRCVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQVCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMEFKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEVELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAITV 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 37132 44896 + CmaCh11G000070.1 Cma11g00007 302516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00007 908 CDD AAA 595 743 - -
Cma11g00007 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 520 IPR027417 -
Cma11g00007 908 Pfam C-terminal, D2-small domain, of ClpB protein 801 881 IPR019489 -
Cma11g00007 908 Gene3D - 573 799 IPR027417 -
Cma11g00007 908 ProSiteProfiles UVR domain profile. 495 530 IPR001943 GO:0005515
Cma11g00007 908 Pfam ATPase family associated with various cellular activities (AAA) 282 412 IPR003959 GO:0005524|GO:0016887
Cma11g00007 908 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 75 907 - -
Cma11g00007 908 Gene3D - 228 421 IPR027417 -
Cma11g00007 908 ProSitePatterns Chaperonins clpA/B signature 1. 372 384 IPR018368 GO:0005524
Cma11g00007 908 Gene3D UVR domain 487 551 - -
Cma11g00007 908 Gene3D - 801 897 - -
Cma11g00007 908 Pfam AAA domain (Cdc48 subfamily) 620 794 IPR003959 GO:0005524|GO:0016887
Cma11g00007 908 ProSiteProfiles Clp repeat (R) domain profile. 92 235 IPR004176 -
Cma11g00007 908 SMART ClpB_D2_small_2 801 891 IPR019489 -
Cma11g00007 908 Pfam AAA lid domain 421 522 IPR041546 -
Cma11g00007 908 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Cma11g00007 908 Pfam Clp amino terminal domain, pathogenicity island component 182 223 IPR004176 -
Cma11g00007 908 Gene3D - 423 567 - -
Cma11g00007 908 PANTHER ATP-DEPENDENT CLP PROTEASE 75 907 - -
Cma11g00007 908 SMART AAA_5 277 418 IPR003593 -
Cma11g00007 908 SMART AAA_5 621 802 IPR003593 -
Cma11g00007 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 670 688 IPR001270 GO:0005524
Cma11g00007 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 625 643 IPR001270 GO:0005524
Cma11g00007 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 699 717 IPR001270 GO:0005524
Cma11g00007 908 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 732 746 IPR001270 GO:0005524
Cma11g00007 908 ProSitePatterns Chaperonins clpA/B signature 2. 655 673 IPR028299 -
Cma11g00007 908 Coils Coil 331 351 - -
Cma11g00007 908 Coils Coil 484 511 - -
Cma11g00007 908 CDD AAA 260 413 - -
Cma11g00007 908 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 570 887 IPR027417 -
Cma11g00007 908 SUPERFAMILY Double Clp-N motif 93 203 IPR036628 -
Cma11g00007 908 Gene3D - 91 227 IPR036628 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00007 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - csv:101207083 1649.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00018 Cma11g00007 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00007 Cma-Chr11:37132 Cma13g00138 Cma-Chr13:964701 0 dispersed
Cma10g00018 Cma-Chr10:70380 Cma11g00007 Cma-Chr11:37132 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00007 Cma_Chr11 FPKM 27.014561 31.77232 80.757156 80.527565 118.13591 133.038834 123.589531 86.934479 86.013939 79.362183