Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00009 ATGGCAGATGTTCAACCCCCCGACGCCCAGATGAACGGCGGTCCTGCCCCTCTCGTCGTCTCCTCCGATACCGTTGGATCCAAACGCCAGCGAAGGCCTAGCGTCCGATTGGGGGATATCGGCGGCGACCAGCCCTACGATTCCCATGCTCGCCGCACGAATAAGCCTTGGAAGTTTGGTTTGGAAAATCGCAAGGACGCCGCTGTCTCTGCTAAGAACTCTAAAACTCGTCCCTTGACCAACTTGAGCTCGGCCGGGGAATTTCAGGAGACCGTAGATGGCGAAGACAAAGAGAACAATTTGGATAGTGTTGCAATTGGGAGCTGGAGGTTAAAGGATTCGAAGCGGAGAGCCTCCGCGGGCACCAAGAGGGTGAGGACTAATTGGGTATCCTCGAAGCACGACGAAGGCGGAGGAGGTGGGGAACGGGAAGGCGATGAAAAGTACAGCGGGGGGGAGGATGTGGATGAGGGGTATCGGGATTACGAGATTGAGAACTCGGAAAGTCCGTTGAAAGAGCAGAGCTCAATGCATTCGCTTGAGAATTTGGGGATAGAAGGTCAGGGGAACGAAAGGGAGATGCTTTATCAGGGGAATAGAAGATGTATCCGGTCTAGGGTTTCGGAGGGCAGGGAGCAGCAAGAAGGGCTGGAATTTTCAGGGCCTTCGGATACGGACGCGAGGAATTGGAAATGCGGGACTAGCGGTGATAGGAATGGGAATGGTGGGAGAGGAGTATGTGGGGAAGACGGGGTTAGAGTTTGGCTCAACGGCTTAGGGTTAGGTCGGTATGCTCCAGTTTTTGAAATTCACGAGGTGGACGATGAGGTTTTGCCAATGTTGACACTCGAGGATCTCAAGGATATGGGAATAACTGCAGTTGGGTCCCGGAGAAAAATTGCTTACATCTTCTCCTCTACTGCAATTTTCCCCATAAATCTTTTTCCATTTGATTGTGATATCTATGTAGTGAAATAA 978 51.94 MADVQPPDAQMNGGPAPLVVSSDTVGSKRQRRPSVRLGDIGGDQPYDSHARRTNKPWKFGLENRKDAAVSAKNSKTRPLTNLSSAGEFQETVDGEDKENNLDSVAIGSWRLKDSKRRASAGTKRVRTNWVSSKHDEGGGGGEREGDEKYSGGEDVDEGYRDYEIENSESPLKEQSSMHSLENLGIEGQGNEREMLYQGNRRCIRSRVSEGREQQEGLEFSGPSDTDARNWKCGTSGDRNGNGGRGVCGEDGVRVWLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKIAYIFSSTAIFPINLFPFDCDIYVVK 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 49188 50336 + CmaCh11G000090.1 Cma11g00009 302518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00009 325 SUPERFAMILY SAM/Pointed domain 249 304 IPR013761 -
Cma11g00009 325 MobiDBLite consensus disorder prediction 207 229 - -
Cma11g00009 325 Pfam SAM domain (Sterile alpha motif) 251 302 IPR001660 GO:0005515
Cma11g00009 325 ProSiteProfiles SAM domain profile. 250 300 IPR001660 GO:0005515
Cma11g00009 325 MobiDBLite consensus disorder prediction 73 88 - -
Cma11g00009 325 MobiDBLite consensus disorder prediction 45 62 - -
Cma11g00009 325 MobiDBLite consensus disorder prediction 128 157 - -
Cma11g00009 325 PANTHER SCP160 17 300 - -
Cma11g00009 325 PANTHER - 17 300 - -
Cma11g00009 325 SMART SAM_4 244 310 IPR001660 GO:0005515
Cma11g00009 325 Gene3D - 246 302 IPR013761 -
Cma11g00009 325 CDD SAM_superfamily 252 300 - -
Cma11g00009 325 MobiDBLite consensus disorder prediction 1 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00009 - - - mcha:111007101 537.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00030 Cma11g00009 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00280 Cma-Chr10:1243474 Cma11g00009 Cma-Chr11:49188 6.36E-14 dispersed
Cma11g00009 Cma-Chr11:49188 Cma11g00229 Cma-Chr11:1158837 3.10E-15 dispersed
Cma10g00030 Cma-Chr10:110368 Cma11g00009 Cma-Chr11:49188 7.88E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g40 . . Bda06g00712 Bda15g00693 Bpe12g00463 . . . . . Cma10g00030 Cma11g00009 Car10g00021 Car11g00009 . . Cpe04g01637 . . . . . . . Cla06g01774 Cam06g1966 Cec06g2017 Cco06g2024 Clacu06g1924 Cmu06g1865 Cre06g2678 . . Cone13ag0251 Cone19ag0234 . . . . . . . . Bpe07g00905 . . Bma08g00276 . Cmo10g00027 Cmo11g00008 . . . . . Cpe18g00930 . . . . . . . . . . . . . . . . Chy02g02692 Cme02g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007477 3 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00009 Cma_Chr11 FPKM 10.688139 13.93695 20.856956 19.809221 17.908775 15.359444 18.28816 21.557543 21.434896 18.572863