Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00018 ATGACGAGCAAAAGGAAAAGGGGAGAAGAGGGCATGGGAGAAGGAGAGATCGTATGGCAAACCCCAGCCAATGCCCCTCAGCGATGCGATTATATATTTCACAATGGGAGGCGGCACGTTAGACCTTACTACTTCGAGTTCATTGCCCATGTTAAGAATCGATGGGCCGGCAAATCCGTTGTCGACTTGTTTACTGAAGAGTTTAAAGGCCGACCATACGAGTACTATGTTGATGCAGTCAAATGTGGTCGCATACAAGTCGATGGGGAGATGGTGCCTACATCATATATAGTTAAAACATCTCAAAAGATAAGCCATTTTCTGCACAGGCATGAACCGCCTGTAATGGCTTTGGAGGTGAAAATTCTCAAAGAAGAAGCAGATGTGCTGACGGTTTACAAGCCTGCGTCTGTTCCAGTTCATCCATGTGGTCAATATAGGAAGAACACCGTTGTTGGCATACTTCAGGCAGAGCATGGTTTGGCACCTCTATTTCCTATACATCGACTAGACCGTCTTGTCTCAGGACTTCTTATCATTGCTAGAAATGCATCGAAAGCTGATCTTTTCAGACAACAGATTGAATCTGGGCTGGTGAAGAAACAGTATATTGCAAGGGTGGTGGGTGTGTTTCCCGAAGAGGAGCAAGTGGTCGATGTTCACATAAACTACAATGCTCGAGAGGGAAGGAGCACAGCGGAGATGGTTGATTCTTGCAAGGATACTATGGCAAAGGGGAAGGCCGCTCAAACAAAGTTTACTTGCATCAGTTCCGATGGAGTCCATAGCATTGTTTTATGTGAACCGGTCACTGGACGAACTCATCAAATCCGTGTGCATTTGCAGTACACAGGGTATCCTATTGCCAACGATGCACTGTACCTTACAAAAGTAGCTTCTGGTCGCTCCATGGAAAAAACAACTGCAGATAGAGCTGCTGCGATATCTGCGAGTTCTACAGCACATGATATCGAAGAAGATTGTGTTAATGCACGCAAAGAAAACTCAAGTGAAGATTTTAGGATTGACCCTATGTGCACAAACTGTCCAAATTTGGCTCCAAAAGGATATGACGGAGAAGAAGAGGGATTGTGGCTGCATTGCGTTCGGTACTCTGGACCAGGATGGATCTACGAATGCCCATATCCAGAATGGGCTTCACTTAAATAG 1170 45.47 MTSKRKRGEEGMGEGEIVWQTPANAPQRCDYIFHNGRRHVRPYYFEFIAHVKNRWAGKSVVDLFTEEFKGRPYEYYVDAVKCGRIQVDGEMVPTSYIVKTSQKISHFLHRHEPPVMALEVKILKEEADVLTVYKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPIHRLDRLVSGLLIIARNASKADLFRQQIESGLVKKQYIARVVGVFPEEEQVVDVHINYNAREGRSTAEMVDSCKDTMAKGKAAQTKFTCISSDGVHSIVLCEPVTGRTHQIRVHLQYTGYPIANDALYLTKVASGRSMEKTTADRAAAISASSTAHDIEEDCVNARKENSSEDFRIDPMCTNCPNLAPKGYDGEEEGLWLHCVRYSGPGWIYECPYPEWASLK 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 73589 77676 - CmaCh11G000180.1 Cma11g00018 302527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00018 389 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 13 388 - -
Cma11g00018 389 CDD PseudoU_synth_ScRIB2 105 387 - -
Cma11g00018 389 PANTHER PSEUDOURIDINE SYNTHASE 13 388 - -
Cma11g00018 389 Pfam RNA pseudouridylate synthase 128 282 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cma11g00018 389 ProSitePatterns Rlu family of pseudouridine synthase signature. 167 181 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cma11g00018 389 Gene3D Pseudouridine synthase 113 371 - -
Cma11g00018 389 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 54 317 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Cma11g00018 389 SUPERFAMILY Pseudouridine synthase 112 385 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00018 K15454 PUS9; tRNA pseudouridine32 synthase [EC:5.4.99.28] - csv:101221837 694.886
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00039 Cma11g00018 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00018 Cma-Chr11:73589 Cma15g00446 Cma-Chr15:1980636 1.40E-17 dispersed
Cma10g00039 Cma-Chr10:153513 Cma11g00018 Cma-Chr11:73589 0 wgd
Cma11g00018 Cma-Chr11:73589 Cma18g00246 Cma-Chr18:1295381 4.14E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g66 . . . Bda15g00683 Bpe12g00469 . . . . . Cma10g00039 Cma11g00018 Car10g00031 Car11g00016 Sed12g2534 . Cpe04g01631 Bhi02g00655 Tan09g2405 Cmetu02g0008 . Hepe09g0029 . . Cla06g01762 Cam06g1955 Cec06g2005 Cco06g2010 Clacu06g1913 Cmu06g1853 Cre06g2666 . . Cone13ag0241 . . . . . . . . . . . . Bma08g00268 . Cmo10g00037 Cmo11g00017 . . . . . Cpe18g00921 . . . . . . . . . . . . . . Lsi06g01661 Csa01g00032 Chy02g02683 Cme02g02089
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006251 1 3 0 1 1 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00018 Cma_Chr11 FPKM 2.567262 3.618836 6.780148 5.724235 8.975321 10.215711 8.754166 8.646281 9.038727 9.412699