Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00019 ATGCCGGAGGACGATTTGATTGACATTAAGTTCAGGCTCTACGATGGTTCTGATATTGGACCATTTCGATACTCGTCCGCATCGACAATAGATGTGCTTAAGCAGAGAATAGTGTCCGATTGGCCTAAAGGCAAAACAATCACTCCAAAGGCAGCCAGTGAAGTAAAACTGATAAGTTCTGGAAAAATTTTGGAAAATAACAAGACTGTTGGTCAGTGTAAATTACCTTTTGGTGAGTTCACTGGAGGAGTTACTATAATGCACGTTGTTGTACAGCCATCCCTAGCAAAAGCTAAAACAGGGCACCGGATTACTTGTGCGCGTTTCCTTATCAATCCGACGTCGGGATCACACACTCGAACAATTTCCGAGGAATACTCTAATCAGATGCCGGAGGACGATTTGATTGACATCAAGTTCAGGCTGTACGATGGTTCTGATGTTGGACCATTTCGATACTCCTCCGCCTCGACGGTTGATGTGCTTAAGCAGAGAATAGTGTCTGATTGGCCCAAAGGCAAAACAGTCACTCCAAAGGCAGCCAGTGAAGTAAAACTGATAAGTTCGGGCAAAATTTTGGAAAATAATAAGACTGTTGGTCAGTGTAAATTACCTTTTGGTGAGTCCACAGGAGGAGTTATTATAATGCATGTTGTTGTACAACCATCCCTAGCAAAAGCCAAGACAGTTTGCCAACTTGTATGGTCGTGGTCTTGGGAGTTGGAATTGCCATCTGAATTCCGGAACAGCATCGACGGTATTCGTTTACAAGTGCCTAGCTTGGCAATTGCCACGATAGGCGTGAGAGAATTCGGTGATGAGGAAGGTGCCGCCAAAAGAATGTTAATGGTAACTCCAGAGCTCCGTTTCTACAAGGAGCTAACGTTTTTCCAGTATTCTTATCTTATCTAG 912 43.75 MPEDDLIDIKFRLYDGSDIGPFRYSSASTIDVLKQRIVSDWPKGKTITPKAASEVKLISSGKILENNKTVGQCKLPFGEFTGGVTIMHVVVQPSLAKAKTGHRITCARFLINPTSGSHTRTISEEYSNQMPEDDLIDIKFRLYDGSDVGPFRYSSASTVDVLKQRIVSDWPKGKTVTPKAASEVKLISSGKILENNKTVGQCKLPFGESTGGVIIMHVVVQPSLAKAKTVCQLVWSWSWELELPSEFRNSIDGIRLQVPSLAIATIGVREFGDEEGAAKRMLMVTPELRFYKELTFFQYSYLI 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 77960 86348 + CmaCh11G000190.1 Cma11g00019 302528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00019 303 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 105 IPR040015 -
Cma11g00019 303 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 130 230 IPR040015 -
Cma11g00019 303 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 3 1 105 - -
Cma11g00019 303 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 3 130 230 - -
Cma11g00019 303 ProSiteProfiles Ubiquitin domain profile. 136 204 IPR000626 GO:0005515
Cma11g00019 303 CDD Ubl_MUBs_plant 6 93 - -
Cma11g00019 303 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Cma11g00019 303 CDD Ubl_MUBs_plant 135 222 - -
Cma11g00019 303 SUPERFAMILY Ubiquitin-like 2 95 IPR029071 -
Cma11g00019 303 SUPERFAMILY Ubiquitin-like 130 225 IPR029071 -
Cma11g00019 303 Pfam Ubiquitin-2 like Rad60 SUMO-like 135 228 IPR039540 -
Cma11g00019 303 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 102 IPR039540 -
Cma11g00019 303 Gene3D - 1 100 - -
Cma11g00019 303 Gene3D - 122 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00019 - - - csv:101210505 201.445
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00041 Cma11g00019 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00019 Cma-Chr11:77960 Cma15g00246 Cma-Chr15:1181639 7.91E-26 dispersed
Cma10g00041 Cma-Chr10:158312 Cma11g00019 Cma-Chr11:77960 3.72E-64 wgd
Cma11g00019 Cma-Chr11:77960 Cma11g01526 Cma-Chr11:9964924 1.42E-47 wgd
Cma11g00019 Cma-Chr11:77960 Cma14g00736 Cma-Chr14:3685027 7.03E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g67 . Blo16g00283 Bda06g00716 . . Bpe13g00192 Bma06g00274 . . . Cma10g00041 Cma11g00019 Car10g00032 Car11g00018 Sed08g1505 . Cpe04g01630 Bhi02g00657 Tan09g2404 Cmetu02g1332 . Hepe09g0030 . . Cla06g01761 Cam06g1954 Cec06g2004 Cco06g2009 Clacu06g1912 Cmu06g1852 Cre06g2665 Cone2ag0992 . Cone13ag0240 Cone19ag0225 . . . . . . Bda11g01585 Bda14g01344 Bpe07g00900 Bpe15g00235 Bma03g01234 . . Cmo10g00038 Cmo11g00018 . . . . . Cpe18g00920 . . . . . . . . . . . . . . Lsi06g01659 Csa01g00033 . Cme02g02088
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0028645 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00019 Cma_Chr11 FPKM 23.233683 27.306578 18.732082 19.645903 9.300123 10.582538 10.367522 23.604715 23.943487 21.897581