Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00020 ATGGAAGACTTTGTTAAGCAGGAACTCGCTGAACCTTTACGTGCGCAAGAAACAAGCAACAATCATGAGGTATCAAATGTGTTTCCCGCGTTTATTGAGCTTAGCAGTGACAGCGAGTCGGATTCCGAAGATTCCGAGCAGGAAGTAGTTGACGGGATTTTAGGAGGAGTTACGAGAAGCATCGGACTCCCGAACGGCGTAGATGGAGGATTTTTGAAGAAGAGGAGGCTGAACGAGTTGGGAGTTATTTTGCCTCTAGGTTTTCTTCCGCCCGCGGCGCTGGCCGGAACAGATGTCGTGGCGGTTCCTTTGCCCCCCTCAGAAGAGGCGGGTACGGGACAAGTGGCGAGGACTTCGAACGCTAATGCTTTTGCTTGCAAACAGTTTTGGAAGGCAGGAGATTTTGAAGAAGCTCCTTGTAGTAACTGGGAGTCATCGTCGAGTGGCATGGACCACGTTAGGGTTCATCCCAAGTTTCTGCATTCTAATGCGACCAGTCATAAGTGGGCCCTCGGAGCTTTTGCTGAGTTATTAGACAACTCATTAGATGAGGTTTGCAATGGAGCTACTCATGTTAATATAGACGTGCTTGTGAATAAGAAAGATACGACCAGAATGTTACTGATTGAAGATAATGGTGGTGGGATGAGCCCCGACAAAATGCGTCACTGCATGTCATTGGGCTATTCAGAAAAAAGCAAATTAGCAAACACTATTGGACAGTATGGTAATGGTTTTAAGACTAGTACTATGAGACTTGGAGCAGATGTAATTGTGTTCTCGCGTTGTGGAAAAAATGGAAAAAGTGGCACGCAGAGCATTGGATTACTGTCCTATACATTTTTGAGAAGCACTGGAAAGGAAGATATCATAGTTCCAATGCTTGACTATGAAAGGAAGGGAGGTGAATGGACCAAGATTGTGCGATCTTCTCTTAGTGATTGGAACAAGAATGTAGAAACAATTGTTCAGTGGTCTCCATTTGCCAGTGAAACTGAACTTCTTCGTCAGTTCTATTTGATGAAAGATCATGGAACTCGCATTATTATATATAACCTCTGGGAAGACGACCAAGGACAGTTGGAACTGGATTTTGATACTGACCAACATGACATCCAAATAAGAGGCGTCAACAGAGATGAGAAGAATATACAAATGGCAAAAAAATTTCCCAACTCCCGGCACTTCTTGACTTATCGACATTCTTTGAGGGGTTATGCTTCAATTCTTTATTTGAGGCTTCCTCCTGGTTTTCGTATTATTCTTCGTGGGAGAGATGTCGAACACCATAACATAGTGAATGATATGATGATGTCCCAAGAGGTCACGTACAGACCTCAGCCAGTTGCTGAGGGGGTTGTCAAAGATACAAACATGGTTGCAGTTGTAACCATTGGGTTTGTGAAGGATGCAAAGCATCACATAGATGTTCAAGGATTCAATGTTTATCACAAGAATCGACTGATTAAGCCATTTTGGAGGCTTTGGAATGCTTCGGGAAGTGATGGTCGTGGAGTTATAGGTGTTCTAGAAGCAAATTTTGTTGAACCTGCCCACGACAAGCAGGGTTTTGAGCGAACAACTGTACTTGCAAGACTTGAGGCACGGTTGATACAGATGCAGAAGACTTACTGGGCTTCCTATTGTCATAAGATCGGCTATGCTCCAAGAAGAATTAATAAATTTACCAATCAGTCTCCGGATAGAGAAAGTTCCCCCGATGATTATTCTTTGCAATCTTCACCTCAATCAAGAAAGAAAAGTGGAAAGACACCTGATAAAGTCTACTCAGGAAAAGATTCAGAAAAGTTTCAGAAAACAAAAAACTGTAGATATGTGAATGGGGATTCAAGTAAAGACAACAACAGCAGTATGGCCCCTGAGCAATCCAGGACACGACCATCTTCTAAGCCACCATCACCTTCTCCACGAGAAGTTTGGGTGGATAGCCTGCATGGAGGACAGGCAAACAGTATTGGCAATGGGACGTTTCATGAGAAGGAACCTCATGGAAATGATGTTTCAGCGACGATGGAAGCGTCTTCAAATGGAGGAGTCAGTCAAGCTCAGGAAGTTGGATCGGGCTCAAGAGGACCCCAACTGAAGGGAGGAGATGTAAACACTAATGAGCGTTCCCTTTCAAGTTCTGAGTTCCACATGCTACAGAAGGTGAAGGAAGAAAATGCAGAATTGAAGGAGAGATTACAGAGAAAGGAAGCTGATCTCAACGAATTGCAGCATGCAAGAGATAGGTGTAAATCACTTGAGGCTCAGCTTAAAGCAGCAGAGCTTAAAATTGAGGAATTGAATAAAGAACAAGAAAGCCTAATAGATATTTTCTCAGAGGAGAGAGATCGAAGAGAAACTGAGGAGAGAAATCTGCGAAAGAAGCTCCAGGAAGCATCCAACACCATTCAAGAGCTGCTAGATAAGATAAGAATACTGGAAAAACGTTAG 2457 43.47 MEDFVKQELAEPLRAQETSNNHEVSNVFPAFIELSSDSESDSEDSEQEVVDGILGGVTRSIGLPNGVDGGFLKKRRLNELGVILPLGFLPPAALAGTDVVAVPLPPSEEAGTGQVARTSNANAFACKQFWKAGDFEEAPCSNWESSSSGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATHVNIDVLVNKKDTTRMLLIEDNGGGMSPDKMRHCMSLGYSEKSKLANTIGQYGNGFKTSTMRLGADVIVFSRCGKNGKSGTQSIGLLSYTFLRSTGKEDIIVPMLDYERKGGEWTKIVRSSLSDWNKNVETIVQWSPFASETELLRQFYLMKDHGTRIIIYNLWEDDQGQLELDFDTDQHDIQIRGVNRDEKNIQMAKKFPNSRHFLTYRHSLRGYASILYLRLPPGFRIILRGRDVEHHNIVNDMMMSQEVTYRPQPVAEGVVKDTNMVAVVTIGFVKDAKHHIDVQGFNVYHKNRLIKPFWRLWNASGSDGRGVIGVLEANFVEPAHDKQGFERTTVLARLEARLIQMQKTYWASYCHKIGYAPRRINKFTNQSPDRESSPDDYSLQSSPQSRKKSGKTPDKVYSGKDSEKFQKTKNCRYVNGDSSKDNNSSMAPEQSRTRPSSKPPSPSPREVWVDSLHGGQANSIGNGTFHEKEPHGNDVSATMEASSNGGVSQAQEVGSGSRGPQLKGGDVNTNERSLSSSEFHMLQKVKEENAELKERLQRKEADLNELQHARDRCKSLEAQLKAAELKIEELNKEQESLIDIFSEERDRRETEERNLRKKLQEASNTIQELLDKIRILEKR 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 85836 100298 - CmaCh11G000200.1 Cma11g00020 302529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00020 818 MobiDBLite consensus disorder prediction 610 633 - -
Cma11g00020 818 Gene3D - 154 371 IPR036890 -
Cma11g00020 818 Pfam Morc6 ribosomal protein S5 domain 2-like 401 545 IPR041006 -
Cma11g00020 818 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 1 809 IPR045261 GO:0016887
Cma11g00020 818 MobiDBLite consensus disorder prediction 562 717 - -
Cma11g00020 818 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 172 288 - -
Cma11g00020 818 Coils Coil 721 818 - -
Cma11g00020 818 MobiDBLite consensus disorder prediction 562 586 - -
Cma11g00020 818 MobiDBLite consensus disorder prediction 675 717 - -
Cma11g00020 818 MobiDBLite consensus disorder prediction 587 609 - -
Cma11g00020 818 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 172 373 IPR036890 -
Cma11g00020 818 MobiDBLite consensus disorder prediction 1 21 - -
Cma11g00020 818 PANTHER PROTEIN MICRORCHIDIA 7 1 809 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00020 - - - mcha:111006875 1371.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00121 Cma-Chr10:520991 Cma11g00020 Cma-Chr11:85836 9.77E-147 dispersed
Cma11g00020 Cma-Chr11:85836 Cma16g00638 Cma-Chr16:3295871 2.29E-115 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g69 . . . . . . . . . . . Cma11g00020 . Car11g00019 . . Cpe04g01628 Bhi02g00471 . . . Hepe09g0031 . . Cla06g01760 Cam06g1953 Cec06g2003 Cco06g2008 Clacu06g1911 Cmu06g1851 Cre06g2664 . . Cone13ag0239 . . . . . . . . Bda14g01346 . Bpe15g00232 Bma03g01239 . . . Cmo11g00020 . . . . . . . . . . . . . . . . . . . . Lsi06g01658 Csa01g00034 . Cme02g02086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002795 1 2 1 1 1 2 1 2 2 2 2 2 1 2 3 1 2 1 1 2 2 1 2 3 2 1 2 4 3 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00020 Cma_Chr11 FPKM 2.887729 2.507555 4.36128 3.854625 6.170287 6.006132 5.873853 10.913725 9.301603 9.083116