Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00023 ATGAAAAGCAAAAAGTCGAAGACAGCTACAACTTCCGTCTCTATTGTTGATTTGAAGTCCATCATTCATCAGTATGCAATGTTCTTCGACAAGTTAGTGGAGCTCATCCCTGCAAGATTCTACTTACCTAATGACGAAAACGACAAACCTTGGTTTCAGGGCCTTAGCAACACTGAGAAGGCTTTGGCTAAGAAGGAATCAAAGGAAAATCTTAAGAAAGCTCGAAGAGATCGAATGGACCCTGAAAAGTCAGCTAGATCAACCCTTGATTTGCTGAAGCAAAACTTGGAAAAGAAAAAGTTAGAAGATGAAAGCGATGATAATGAAATGGATGTTAAGCCAGTAACGTCTGGGTTGGATGGTGATGTTCAATCAGTTACATATGAAGAGCTTCGACAACGTCTTCATCGAAAGATTGAAGAGTTCCGAGCAAATAGAAATACAGGATGTTCGAATAGGGAAAAGAAGAGGAATGAAAGAAATGAGAGGAGGGAACTTATTCAGAAGAAACGCAAGAGAGGACATGGTCCTGAGGAAAAGAAATTAGCAGGCCACCACTCAAGAGATGAAGTGGAGAAGAATGTAGATGAAGCCTCTAAAGAACTTGCATTTAGTCATGTCAAACTCGGGACTGAAGAAGAGCATGGGAAGAAAAAGAAGAGAAAGCTCTCCAAGTTGGAGGAGCTTGAAAGAGCTAAAAAATTAGACGAAGCAAAGAGAGATCCTGAGAAAGGCGAGATAATCTCAAAGAAGCATTCTTGGAAAGCAGCCACAAGTAGAGCTGCGGGGGCTAAGGTCCACGATGATCCAAAACTCCTGATGAAGAGCTTAAAGAAGGAAAAGAAACAGCAGCTGAAGAATGTCGAGAAATGGAAGGATAGGATTGAAACAACCCAGAAGATGAAAGCAGAAAGACAACAAAAGAGGTCAGAAAACATTTCACAGAAAATTCACGATAAGAAGATGCGGCGAATTGCAAAGAGGGAGAAGAAACTTGTGCGTCCTGGCTTTGAAGGTCGCAAAGAAGACGCGAGGAAGGAAGAATTATTCGACGATGAGCAGTGGTTGGCTTACTGGATCATCTATTCCTTTCTCACTCTCATGGAGATGGTTGTTCTGCAACCTTTGTTAGAGTGGATAGCAGTTTGGTATTGGGTGAAATTGGTATTTGGGGCATGGCCGGTTCTGCCACAGCTCAAAGGTGCAGCTTTCTTGTATGAAAGATTCGTGAGGCAGCAGATTAAGAAACATGGTTTGGGAAGCAATTCTCCTGATGCGTTGATTCACTAA 1290 42.09 MKSKKSKTATTSVSIVDLKSIIHQYAMFFDKLVELIPARFYLPNDENDKPWFQGLSNTEKALAKKESKENLKKARRDRMDPEKSARSTLDLLKQNLEKKKLEDESDDNEMDVKPVTSGLDGDVQSVTYEELRQRLHRKIEEFRANRNTGCSNREKKRNERNERRELIQKKRKRGHGPEEKKLAGHHSRDEVEKNVDEASKELAFSHVKLGTEEEHGKKKKRKLSKLEELERAKKLDEAKRDPEKGEIISKKHSWKAATSRAAGAKVHDDPKLLMKSLKKEKKQQLKNVEKWKDRIETTQKMKAERQQKRSENISQKIHDKKMRRIAKREKKLVRPGFEGRKEDARKEELFDDEQWLAYWIIYSFLTLMEMVVLQPLLEWIAVWYWVKLVFGAWPVLPQLKGAAFLYERFVRQQIKKHGLGSNSPDALIH 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 109580 112477 - CmaCh11G000230.1 Cma11g00023 302532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00023 429 MobiDBLite consensus disorder prediction 146 253 - -
Cma11g00023 429 MobiDBLite consensus disorder prediction 63 113 - -
Cma11g00023 429 MobiDBLite consensus disorder prediction 63 120 - -
Cma11g00023 429 Pfam Surfeit locus protein 6 148 324 IPR029190 -
Cma11g00023 429 PANTHER SURFEIT LOCUS PROTEIN 6 3 343 IPR007019 -
Cma11g00023 429 PANTHER BNAC02G02430D PROTEIN 3 343 - -
Cma11g00023 429 MobiDBLite consensus disorder prediction 146 267 - -
Cma11g00023 429 Coils Coil 82 102 - -
Cma11g00023 429 Pfam 60S ribosome biogenesis protein Rrp14 22 82 IPR029188 -
Cma11g00023 429 Coils Coil 274 301 - -
Cma11g00023 429 Pfam TB2/DP1, HVA22 family 351 412 IPR004345 -
Cma11g00023 429 Coils Coil 212 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00023 - - - mcha:111009704 470.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00049 Cma11g00023 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00023 Cma-Chr11:109580 Cma20g00252 Cma-Chr20:1235582 4.91E-14 dispersed
Cma17g00129 Cma-Chr17:675270 Cma11g00023 Cma-Chr11:109580 9.25E-177 transposed
Cma10g00049 Cma-Chr10:180893 Cma11g00023 Cma-Chr11:109580 2.94E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g80 . . . . . Bpe13g00195 . . . . Cma10g00049 Cma11g00023 Car10g00038 . Sed08g0020 . . Bhi02g00663 Tan09g2392 Cmetu02g1141 . . . . Cla06g01756 Cam06g1948 Cec06g1997 Cco06g2003 Clacu06g1905 Cmu06g1845 Cre06g2659 . Cone16ag0005 . . . . . . . . . Bda14g01350 . Bpe15g00227 Bma03g01244 . . Cmo10g00044 . . . . . . Cpe18g00917 . . . . . . . . . . . . . . Lsi06g01655 Csa01g00041 Chy02g02677 Cme02g02081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002685 1 3 0 3 2 2 2 2 1 2 2 2 2 2 2 2 2 2 1 2 2 1 1 2 2 2 2 1 7 1 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00023 Cma_Chr11 FPKM 7.103876 9.782925 9.916979 10.178028 13.344246 12.818799 14.168579 19.284853 19.731949 18.209867