Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00027 | ATGGCGGACGTGATGCTGATGAAAGAGATCGAGGACACGGCTGGTCGGCTTGGGATAGATCTTTCCCAAGTTGATTTTGAGTCTATTCGTCTCCCTCCCGGCGAAGATTTTGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCAGGGTTCGGAAACATTATAGTTGTTGGCAATCTTCCGGTTGTTCCTTCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTTATCAAGGATGATGGCCTATGGATGCCTGTTGACCCTACTACACAGAAAACGTTAGGGTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGTTGGATAGAGCACATATTTTCGCTGTTAATATGTTTGAGGACTTCGACAGATTTATGAAAGTACCAGATGAGTGGGCTCCTCCTGAAAGTAACCCATATACTCCGGGGGAAAATCTTCAACAGTGGCTTATGGATGAAAAAGCACGGGATCAGTTAGTTATTCGTTCTGGTTCTGATACTGAGGTCTTCTGGAATGATGCTAGACATTTAAAGCCTGAGCCGGTCTACAAGCGTCCATTCTGGACTGAGAGTTATGTGCATTGGTCCCCCTTGGGGACTTACCTAGCCACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCCACAGGTTAAGTTAATTGATTTTTCACCTGGTGAGAAATATCTGGTTACTTACAGCAGCCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATTGTCATCAATATTTTTGATGTAAGAACTGGAAAAGTTATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCGGGCGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTTCCAGGATGGGGAAGAATGTAATTTCTGTCTATGAAACAGAGACTTTCTCCCTCATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACCGATCCCATTATTGCACTCTTTGTTCCTGAGCTAGGTGGTGGAAACCAACCGGCTAGGGTGAGTCTTGTGCAAATCCCGAGCAAAGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAAGTTGACCGATATACAAAGACCAAGAAAAGCATATACACAGGGTTTGAACTTTTCCGCATAAAAGAGCGGGATATACCTATTGAAGTGTTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCCTGGGAGCCAAAGGGTCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCCATGCGAAGCACTCACAACAGTGGCCGAGTATCAAAACTTACAACTCTAAAAGGCAAGCAAGCCAATGCTCTTTTCTGGTCACCTTCTGGACGCTTCATCATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCAACTGCTGAGCATTTTATGGCTACTGATATTGAATGGGATCCTACTGGACGGTATGTTGCAACTGCTGTAACTTCAGTTCACGAGATGGAAAATGGTTTCAACATATGGTCCTTCAATGGAAAGCTGCTGTATCGAGTCTTGAAGGACCATTTCTTTCAGCCAGGTGATCGTATCGCCCTCTCCGACTTGCCATCAGCTGAATCACAGACCACGCTCGCTTCTGCTCTAGAAATGGCAGCTCTAGCTCGCTTTTCCAGGAAGGCAATAGCCTCGGCGGTTGCGACTAATCAACTCCACCGCGCTTTGTCGACGGAAGTGTCGAAAACGATTGCGCCCTCACCGGATCGAGTCAAGTGGGACTACAGAGGTCAAAGAAAGATAATCCCGCTTGGCCAGTGGCTCCCCAAAATTGCCGTCGACGCCTACGTTGCGCCTAATGTTGTCCTCGCCGGACAGGTCAACGTCTGCGACGGGGCCTCCGTTTGGGCGGGTTCCGTTCTCCGCGGCGATCTCAACAAGATCACCGTCGGGTTTTGCTCTAATGTACAGGAACGGTGCGTCCTTCATGCTGCTTGGTCCTCTCCAACAGGACTGCCAGCAGAGACATCCATAGAGAGATTTGTCACCATTGGTGCATATAGTCTGTTGCGGTCATGCACGATTGAGCCGGAGTGCATTATTGGGCAGCATTCCATTCTCATGGAAGGTTCCCTGGTGGAGACACACTCAATTCTCGAAGCTGGGTCTGTCGTTCCCCCAGGAAGGAGAATTCCCAGTGGTGAACTTTGGGCAGGAAACCCAGCAAGGTTTGTCAGGACGTTGACCCACGAGGAGACCTTGGAAATTCCTAAACTTGCTGTTGCAATTAATGACCTGAGCAAGGAACATTTCTCAGAGTTTCTTCCTTACTCCACAGTATATTTGGAGGTCGAGAAATTCAAGAAGTCGTTGGGTATTACCATATGA | 2622 | 46.53 | MADVMLMKEIEDTAGRLGIDLSQVDFESIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVGNLPVVPSEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFAVNMFEDFDRFMKVPDEWAPPESNPYTPGENLQQWLMDEKARDQLVIRSGSDTEVFWNDARHLKPEPVYKRPFWTESYVHWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFSRMGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSIYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPSGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRVLKDHFFQPGDRIALSDLPSAESQTTLASALEMAALARFSRKAIASAVATNQLHRALSTEVSKTIAPSPDRVKWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAGQVNVCDGASVWAGSVLRGDLNKITVGFCSNVQERCVLHAAWSSPTGLPAETSIERFVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPSGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKEHFSEFLPYSTVYLEVEKFKKSLGITI | 873 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 121811 | 130443 | - | CmaCh11G000270.1 | Cma11g00027 | 302536 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00027 | 873 | CDD | RRM_eIF3B | 59 | 143 | IPR034363 | - | |
Cma11g00027 | 873 | Gene3D | - | 391 | 646 | IPR015943 | GO:0005515 | |
Cma11g00027 | 873 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 147 | IPR000504 | GO:0003723 | |
Cma11g00027 | 873 | Gene3D | - | 59 | 143 | IPR012677 | - | |
Cma11g00027 | 873 | Gene3D | Hexapeptide repeat proteins | 678 | 851 | - | - | |
Cma11g00027 | 873 | Pfam | Eukaryotic translation initiation factor eIF2A | 406 | 605 | IPR013979 | - | |
Cma11g00027 | 873 | Gene3D | - | 178 | 382 | IPR015943 | GO:0005515 | |
Cma11g00027 | 873 | SUPERFAMILY | DPP6 N-terminal domain-like | 217 | 600 | - | - | |
Cma11g00027 | 873 | PANTHER | BNACNNG51870D PROTEIN | 6 | 611 | - | - | |
Cma11g00027 | 873 | SUPERFAMILY | RNA-binding domain, RBD | 56 | 139 | IPR035979 | GO:0003676 | |
Cma11g00027 | 873 | SMART | rrm1_1 | 61 | 142 | IPR000504 | GO:0003723 | |
Cma11g00027 | 873 | SUPERFAMILY | Trimeric LpxA-like enzymes | 687 | 840 | IPR011004 | - | |
Cma11g00027 | 873 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 81 | 136 | IPR000504 | GO:0003723 | |
Cma11g00027 | 873 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 48 | 611 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cma11g00027 | 873 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 6 | 611 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cma11g00027 | 873 | CDD | LbH_gamma_CA_like | 688 | 846 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00027 | Cma-Chr11:121811 | Cma12g00458 | Cma-Chr12:2402740 | 3.76E-38 | dispersed | |
Cma09g01139 | Cma-Chr9:6456947 | Cma11g00027 | Cma-Chr11:121811 | 0 | transposed | |
Cma14g01439 | Cma-Chr14:11024137 | Cma11g00027 | Cma-Chr11:121811 | 2.94E-19 | transposed | |
Cma10g00053 | Cma-Chr10:193352 | Cma11g00027 | Cma-Chr11:121811 | 1.47E-169 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00027 | K03253 | - | csv:101213144 | 1200.65 |