Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00027 ATGGCGGACGTGATGCTGATGAAAGAGATCGAGGACACGGCTGGTCGGCTTGGGATAGATCTTTCCCAAGTTGATTTTGAGTCTATTCGTCTCCCTCCCGGCGAAGATTTTGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCAGGGTTCGGAAACATTATAGTTGTTGGCAATCTTCCGGTTGTTCCTTCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTTATCAAGGATGATGGCCTATGGATGCCTGTTGACCCTACTACACAGAAAACGTTAGGGTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGTTGGATAGAGCACATATTTTCGCTGTTAATATGTTTGAGGACTTCGACAGATTTATGAAAGTACCAGATGAGTGGGCTCCTCCTGAAAGTAACCCATATACTCCGGGGGAAAATCTTCAACAGTGGCTTATGGATGAAAAAGCACGGGATCAGTTAGTTATTCGTTCTGGTTCTGATACTGAGGTCTTCTGGAATGATGCTAGACATTTAAAGCCTGAGCCGGTCTACAAGCGTCCATTCTGGACTGAGAGTTATGTGCATTGGTCCCCCTTGGGGACTTACCTAGCCACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCCACAGGTTAAGTTAATTGATTTTTCACCTGGTGAGAAATATCTGGTTACTTACAGCAGCCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATTGTCATCAATATTTTTGATGTAAGAACTGGAAAAGTTATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCGGGCGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTTCCAGGATGGGGAAGAATGTAATTTCTGTCTATGAAACAGAGACTTTCTCCCTCATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACCGATCCCATTATTGCACTCTTTGTTCCTGAGCTAGGTGGTGGAAACCAACCGGCTAGGGTGAGTCTTGTGCAAATCCCGAGCAAAGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAAGTTGACCGATATACAAAGACCAAGAAAAGCATATACACAGGGTTTGAACTTTTCCGCATAAAAGAGCGGGATATACCTATTGAAGTGTTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCCTGGGAGCCAAAGGGTCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCCATGCGAAGCACTCACAACAGTGGCCGAGTATCAAAACTTACAACTCTAAAAGGCAAGCAAGCCAATGCTCTTTTCTGGTCACCTTCTGGACGCTTCATCATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCAACTGCTGAGCATTTTATGGCTACTGATATTGAATGGGATCCTACTGGACGGTATGTTGCAACTGCTGTAACTTCAGTTCACGAGATGGAAAATGGTTTCAACATATGGTCCTTCAATGGAAAGCTGCTGTATCGAGTCTTGAAGGACCATTTCTTTCAGCCAGGTGATCGTATCGCCCTCTCCGACTTGCCATCAGCTGAATCACAGACCACGCTCGCTTCTGCTCTAGAAATGGCAGCTCTAGCTCGCTTTTCCAGGAAGGCAATAGCCTCGGCGGTTGCGACTAATCAACTCCACCGCGCTTTGTCGACGGAAGTGTCGAAAACGATTGCGCCCTCACCGGATCGAGTCAAGTGGGACTACAGAGGTCAAAGAAAGATAATCCCGCTTGGCCAGTGGCTCCCCAAAATTGCCGTCGACGCCTACGTTGCGCCTAATGTTGTCCTCGCCGGACAGGTCAACGTCTGCGACGGGGCCTCCGTTTGGGCGGGTTCCGTTCTCCGCGGCGATCTCAACAAGATCACCGTCGGGTTTTGCTCTAATGTACAGGAACGGTGCGTCCTTCATGCTGCTTGGTCCTCTCCAACAGGACTGCCAGCAGAGACATCCATAGAGAGATTTGTCACCATTGGTGCATATAGTCTGTTGCGGTCATGCACGATTGAGCCGGAGTGCATTATTGGGCAGCATTCCATTCTCATGGAAGGTTCCCTGGTGGAGACACACTCAATTCTCGAAGCTGGGTCTGTCGTTCCCCCAGGAAGGAGAATTCCCAGTGGTGAACTTTGGGCAGGAAACCCAGCAAGGTTTGTCAGGACGTTGACCCACGAGGAGACCTTGGAAATTCCTAAACTTGCTGTTGCAATTAATGACCTGAGCAAGGAACATTTCTCAGAGTTTCTTCCTTACTCCACAGTATATTTGGAGGTCGAGAAATTCAAGAAGTCGTTGGGTATTACCATATGA 2622 46.53 MADVMLMKEIEDTAGRLGIDLSQVDFESIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVGNLPVVPSEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFAVNMFEDFDRFMKVPDEWAPPESNPYTPGENLQQWLMDEKARDQLVIRSGSDTEVFWNDARHLKPEPVYKRPFWTESYVHWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFSRMGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSIYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPSGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRVLKDHFFQPGDRIALSDLPSAESQTTLASALEMAALARFSRKAIASAVATNQLHRALSTEVSKTIAPSPDRVKWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAGQVNVCDGASVWAGSVLRGDLNKITVGFCSNVQERCVLHAAWSSPTGLPAETSIERFVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVETHSILEAGSVVPPGRRIPSGELWAGNPARFVRTLTHEETLEIPKLAVAINDLSKEHFSEFLPYSTVYLEVEKFKKSLGITI 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 121811 130443 - CmaCh11G000270.1 Cma11g00027 302536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00027 873 CDD RRM_eIF3B 59 143 IPR034363 -
Cma11g00027 873 Gene3D - 391 646 IPR015943 GO:0005515
Cma11g00027 873 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Cma11g00027 873 Gene3D - 59 143 IPR012677 -
Cma11g00027 873 Gene3D Hexapeptide repeat proteins 678 851 - -
Cma11g00027 873 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Cma11g00027 873 Gene3D - 178 382 IPR015943 GO:0005515
Cma11g00027 873 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Cma11g00027 873 PANTHER BNACNNG51870D PROTEIN 6 611 - -
Cma11g00027 873 SUPERFAMILY RNA-binding domain, RBD 56 139 IPR035979 GO:0003676
Cma11g00027 873 SMART rrm1_1 61 142 IPR000504 GO:0003723
Cma11g00027 873 SUPERFAMILY Trimeric LpxA-like enzymes 687 840 IPR011004 -
Cma11g00027 873 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 136 IPR000504 GO:0003723
Cma11g00027 873 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 611 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma11g00027 873 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 611 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cma11g00027 873 CDD LbH_gamma_CA_like 688 846 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00027 Cma-Chr11:121811 Cma12g00458 Cma-Chr12:2402740 3.76E-38 dispersed
Cma09g01139 Cma-Chr9:6456947 Cma11g00027 Cma-Chr11:121811 0 transposed
Cma14g01439 Cma-Chr14:11024137 Cma11g00027 Cma-Chr11:121811 2.94E-19 transposed
Cma10g00053 Cma-Chr10:193352 Cma11g00027 Cma-Chr11:121811 1.47E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00027 K03253 - csv:101213144 1200.65