Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00028 ATGAATAGTCAGGGCGGTCCTTCTAGAAGAAGTATGTCCTTCACAAACGTATCAACTCAGAACAAGAAGAAAACCAATGAGAACGGAATCTCGGATACACCGCGGAAGTCTCTTTCATCTTCTCGTTCATTACAACTCACTGGTGAGCGTACAGTAAAACGATTGCGGCTGTCAAGAGCACTGACAGTTCCTGAAAGTACTACCATCTCTGAGGCTTGTCGTCGGATGGCTGCTCGTAGAGTTGATGCTTTGTTACTAACTGATTCAAATGCATTACTTTGCGGAATCCTCACAGACAAGGATATAGCAACAAGGGTTATTGCTTGTGGAGTTAATCTCGAAGAAACACCCGTGTCCAAAGTTATGACGAGGAATCCAGTTTTTGTTCTTTCTGATACCTTAGCTGTGGAAGCTCTCCAGAAGATGGTTCATGGAAAATTTAGACACTTGCCTGTAGTTGAGAACGGGGAGGTCATTGCATTACTTGATATTGCAAAATGTTTATATGATGCTATTGCACGAATGGAAAGGGCAGCTGAAAAGGGAAAGGCCATTGCAGCAGCAGTTGAAGGTGTTGAAAAAAGTTGGGGAACATCTGTTTCTGGACCTAATACATTTATCGAGACACTCCGAGAGCGTATGTTCAGACCATCTCTGTCTACTTTAATCCCAGAGAATCTAAAGATTGTTACAGTTCCACCCACAGAAACAGTTTTGGTGGCTACGAAAAAGATGCTTGAACTTCGAGTGAGTTCTGCAGTTGTTACAGTTGATAACAAGCCACAAGGAATTCTCACGTCGAAAGATATTTTGATGCGATTAATAGCACAAAATCTTCCACCAGAATCCACACTTGTAGAGAAGGTCATGACTCCAAATCCGGAATGTGCGTCAATTGATACACCAATAGTTGACGCACTGCACACTATGCATGACGGAAAATTCTTGCATCTTCCAGTGATGGATAGAGACGGACGTGTTGTTGCTGTAGTTGATGTAATACATATCACCCATGCTGCCGTTGCTACGGTTGGAAATTCATCTGGAGTTACCAATGAGGCTGCAAGTTCTATGATGCAGAAATTTTGGGATTCTGCCATGGCTTTATCGCCCCATGACGACGATGATGAAATGCGTAGTGAAGGTTCATTGAAATTGGCTTCTGATGGAACGGAGGCTGGAAGAACCCTAACCTTTCCGTCATCTGGAATGCCAAATACTTTTTCTTTCAAACTTGAAGATAGGAAGGGCCGGATGCATCGATTTTCTTGTGATACTCGGAGTTTAACAGATGTTATAACAGCAATCCTTCAGAGAGTCGGTGATGATATTGACCGCAACAAATTGCCTCAGATTTTGTACGAAGATGAAGATCGCGACAAAGTTGTTCTTGCATCAGACAGTGACCTTGTAGCAGCTGTCGAACACGCAAGGTTGGCTGGGTGGAAGGGTCTGAGATTGCATTTAGAATACCCGGGAAGTCGTGGTCGTAAAGGGAGTTCTGGTGCGGGAAATTTGGATTATGCTCAATCAGACGCATGGGCGTCGGCGTACAGTGCAGTTGCAGCTGGAGCCGCCCTTGTTGCCGGATTAGGCGTGTTAGCATACTTGAGAAGATCTGGTAATTAA 1629 44.08 MNSQGGPSRRSMSFTNVSTQNKKKTNENGISDTPRKSLSSSRSLQLTGERTVKRLRLSRALTVPESTTISEACRRMAARRVDALLLTDSNALLCGILTDKDIATRVIACGVNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVHGKFRHLPVVENGEVIALLDIAKCLYDAIARMERAAEKGKAIAAAVEGVEKSWGTSVSGPNTFIETLRERMFRPSLSTLIPENLKIVTVPPTETVLVATKKMLELRVSSAVVTVDNKPQGILTSKDILMRLIAQNLPPESTLVEKVMTPNPECASIDTPIVDALHTMHDGKFLHLPVMDRDGRVVAVVDVIHITHAAVATVGNSSGVTNEAASSMMQKFWDSAMALSPHDDDDEMRSEGSLKLASDGTEAGRTLTFPSSGMPNTFSFKLEDRKGRMHRFSCDTRSLTDVITAILQRVGDDIDRNKLPQILYEDEDRDKVVLASDSDLVAAVEHARLAGWKGLRLHLEYPGSRGRKGSSGAGNLDYAQSDAWASAYSAVAAGAALVAGLGVLAYLRRSGN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 131766 137911 + CmaCh11G000280.1 Cma11g00028 302537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00028 542 ProSiteProfiles CBS domain profile. 122 180 IPR000644 -
Cma11g00028 542 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 12 529 - -
Cma11g00028 542 ProSiteProfiles CBS domain profile. 222 282 IPR000644 -
Cma11g00028 542 CDD CBS_pair_MUG70_2 228 342 - -
Cma11g00028 542 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSCBSPB4-RELATED 12 529 IPR034896 -
Cma11g00028 542 ProSiteProfiles PB1 domain profile. 405 492 IPR000270 GO:0005515
Cma11g00028 542 ProSiteProfiles CBS domain profile. 56 115 IPR000644 -
Cma11g00028 542 SUPERFAMILY CBS-domain pair 49 166 IPR046342 -
Cma11g00028 542 ProSiteProfiles CBS domain profile. 290 348 IPR000644 -
Cma11g00028 542 SUPERFAMILY CBS-domain pair 228 340 IPR046342 -
Cma11g00028 542 CDD CBS_pair_MUG70_1 57 173 - -
Cma11g00028 542 MobiDBLite consensus disorder prediction 1 46 - -
Cma11g00028 542 Pfam PB1 domain 407 490 IPR000270 GO:0005515
Cma11g00028 542 SMART cbs_1 125 169 IPR000644 -
Cma11g00028 542 SMART cbs_1 228 275 IPR000644 -
Cma11g00028 542 SMART cbs_1 59 107 IPR000644 -
Cma11g00028 542 SMART cbs_1 293 341 IPR000644 -
Cma11g00028 542 Pfam CBS domain 228 274 IPR000644 -
Cma11g00028 542 Pfam CBS domain 118 162 IPR000644 -
Cma11g00028 542 Pfam CBS domain 59 104 IPR000644 -
Cma11g00028 542 Pfam CBS domain 286 339 IPR000644 -
Cma11g00028 542 SUPERFAMILY CAD & PB1 domains 400 489 - -
Cma11g00028 542 Gene3D - 206 353 IPR046342 -
Cma11g00028 542 Gene3D - 32 187 IPR046342 -
Cma11g00028 542 SMART PB1_new 407 492 IPR000270 GO:0005515
Cma11g00028 542 CDD PB1_MUG70 408 492 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00028 - - - csv:101212621 868.996
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00055 Cma11g00028 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00028 Cma-Chr11:131766 Cma12g00461 Cma-Chr12:2411428 7.82E-06 dispersed
Cma07g01271 Cma-Chr7:7057782 Cma11g00028 Cma-Chr11:131766 0 transposed
Cma10g00055 Cma-Chr10:199480 Cma11g00028 Cma-Chr11:131766 3.06E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g93 . Blo16g00274 . . Bpe12g00476 . Bma06g00263 . . . Cma10g00055 Cma11g00028 . Car11g00028 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01355 . Bpe15g00223 . . . Cmo10g00049 . . . . . . . . . . . . . . . . . . . . . . Csa01g00048 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001844 2 3 4 3 3 2 2 2 2 2 1 2 1 2 2 2 2 5 2 2 2 2 2 2 2 1 1 4 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00028 Cma_Chr11 FPKM 14.62814 15.34125 11.965255 12.987761 11.055147 9.890738 11.098608 14.414657 14.242573 14.574992