Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma11g00030 | ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTCCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGAGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGACGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTTTCTGATGATGACCCATGGCGCCATGACAGCAACCCGTCCTGCTTCAAGTGCATGCATGCTTTGA | 738 | 55.42 | MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSTWQPSAEDGSYASGGNSGQGNLDGQRFLMMTHGAMTATRPASSACML | 245 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 141365 | 143862 | + | CmaCh11G000300.1 | Cma11g00030 | 302539 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma11g00030 | 245 | Pfam | Core histone H2A/H2B/H3/H4 | 43 | 123 | IPR007125 | GO:0003677 | |
Cma11g00030 | 245 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cma11g00030 | 245 | Gene3D | Histone, subunit A | 27 | 138 | IPR009072 | GO:0046982 | |
Cma11g00030 | 245 | MobiDBLite | consensus disorder prediction | 193 | 222 | - | - | |
Cma11g00030 | 245 | MobiDBLite | consensus disorder prediction | 9 | 25 | - | - | |
Cma11g00030 | 245 | SUPERFAMILY | Histone-fold | 33 | 132 | IPR009072 | GO:0046982 | |
Cma11g00030 | 245 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 | 1 | 223 | - | - | |
Cma11g00030 | 245 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 1 | 223 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00030 | Cma-Chr11:141365 | Cma11g01124 | Cma-Chr11:6367027 | 1.96E-69 | dispersed | |
Cma10g00058 | Cma-Chr10:216025 | Cma11g00030 | Cma-Chr11:141365 | 5.91E-155 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35766 | PF00808 | CBFD_NFYB_HMF | 2.70E-17 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma11g00030 | - | - | cmax:111500215 | 377.096 |