Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00030 ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTCCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGAGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGACGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTTTCTGATGATGACCCATGGCGCCATGACAGCAACCCGTCCTGCTTCAAGTGCATGCATGCTTTGA 738 55.42 MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSTWQPSAEDGSYASGGNSGQGNLDGQRFLMMTHGAMTATRPASSACML 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 141365 143862 + CmaCh11G000300.1 Cma11g00030 302539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00030 245 Pfam Core histone H2A/H2B/H3/H4 43 123 IPR007125 GO:0003677
Cma11g00030 245 MobiDBLite consensus disorder prediction 1 26 - -
Cma11g00030 245 Gene3D Histone, subunit A 27 138 IPR009072 GO:0046982
Cma11g00030 245 MobiDBLite consensus disorder prediction 193 222 - -
Cma11g00030 245 MobiDBLite consensus disorder prediction 9 25 - -
Cma11g00030 245 SUPERFAMILY Histone-fold 33 132 IPR009072 GO:0046982
Cma11g00030 245 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 223 - -
Cma11g00030 245 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00030 Cma-Chr11:141365 Cma11g01124 Cma-Chr11:6367027 1.96E-69 dispersed
Cma10g00058 Cma-Chr10:216025 Cma11g00030 Cma-Chr11:141365 5.91E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35766 PF00808 CBFD_NFYB_HMF 2.70E-17 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00030 - - cmax:111500215 377.096