Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00030 ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTCCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGAGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGACGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTTTCTGATGATGACCCATGGCGCCATGACAGCAACCCGTCCTGCTTCAAGTGCATGCATGCTTTGA 738 55.42 MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSTWQPSAEDGSYASGGNSGQGNLDGQRFLMMTHGAMTATRPASSACML 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 141365 143862 + CmaCh11G000300.1 Cma11g00030 302539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00030 245 Pfam Core histone H2A/H2B/H3/H4 43 123 IPR007125 GO:0003677
Cma11g00030 245 MobiDBLite consensus disorder prediction 1 26 - -
Cma11g00030 245 Gene3D Histone, subunit A 27 138 IPR009072 GO:0046982
Cma11g00030 245 MobiDBLite consensus disorder prediction 193 222 - -
Cma11g00030 245 MobiDBLite consensus disorder prediction 9 25 - -
Cma11g00030 245 SUPERFAMILY Histone-fold 33 132 IPR009072 GO:0046982
Cma11g00030 245 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 223 - -
Cma11g00030 245 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00030 - - - cmax:111500215 377.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00030 Cma-Chr11:141365 Cma11g01124 Cma-Chr11:6367027 1.96E-69 dispersed
Cma10g00058 Cma-Chr10:216025 Cma11g00030 Cma-Chr11:141365 5.91E-155 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00058 . 96 280 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 6.0e-88 321.2
Cma11g00030 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 3.9e-87 318.5
Cma11g01124 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 8.2e-53 204.5
Cma10g01076 . 76 243 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.7 1.4e-52 203.8
Cma11g01619 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 7.0e-52 201.4
Cma19g00286 . 73 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.8 9.1e-52 201.1
Cma11g01124 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 1.6e-53 206.8
Cma10g01076 . 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 53.1 1.9e-49 193.4
Cma11g01619 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 72.1 3.2e-49 192.6
Cma19g00286 . 33 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.1 1.6e-48 190.3
Cma10g00058 . 96 194 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cma11g00030 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cma11g01124 . 61 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.4 2.2e-60 229.6
Cma10g01076 . 1 243 CCAAT-HAP5 Transcription Factor Family AT1G54830 55.1 1.1e-54 210.7
Cma11g01619 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 2.5e-51 199.5
Cma10g00058 . 96 254 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 7.1e-51 198.0
Cma11g00030 . 39 197 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 1.2e-50 197.2
Cma19g00286 . 33 214 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.2 3.5e-50 195.7
Cma10g00058 . 96 253 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 2.5e-37 152.9
Cma11g00030 . 39 196 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.4 3.2e-37 152.5
Cma10g00058 . 96 280 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 2.9e-80 295.8
Cma11g00030 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 1.1e-79 293.9
Cma11g01124 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 9.1e-50 194.5
Cma11g01619 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.0e-49 193.4
Cma19g00286 . 73 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 1.3e-48 190.7
Cma10g01076 . 76 243 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.9 1.7e-48 190.3
Cma11g01619 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 4.7e-65 245.0
Cma19g00286 . 36 203 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.7 2.0e-60 229.6
Cma11g01124 . 82 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.7 1.1e-50 197.2
Cma10g00058 . 96 219 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.5e-50 194.9
Cma11g00030 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.5e-50 194.9
Cma10g01076 . 76 207 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.1 7.2e-50 194.5
Cma04g01302 . 1 284 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.7 7.6e-56 214.9
Cma05g00425 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.0 4.2e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35766 PF00808 CBFD_NFYB_HMF 2.70E-17 CL0012 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00030 Cma_Chr11 FPKM 20.205961 22.746712 40.382416 44.152073 56.173744 46.441044 53.79578 32.16003 35.58923 31.09741