Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00034 ATGGCACCGCATGACATTCGCCGTCCTCACAAACGCCCCGCGATCTCCGACCAGCAGAAGCGGCGGGAGTTTTCTTTACAACGGCAACAGCAGAATCGTCGCGACGCTCAGCAACAAGCACGTTCCTTAGCCTCCACGCTCCTCTCCCTCTCTTCCACATTCAACGAGCCTAGTACCTCTGAGTCGGTGTTGGAGGTTGAGCTAAATGAACTCGATTCCGAAACGGAATGCTCGCCGGTGCTTAGATCGCAGAGTGAATTTAACGAGCCTTCTCTGAAGGAGTTCGATGTTCGCCAGGCTTCGAAGCTCAAAGGTTCAGAGGCTCGTAAGTGGTTTTCGAGGCAACTGTTACTTCCTGAATGGATGATAGATGTTCCTGATCGACTTAGCGAAGACTGGTACGTATTTGCAAGGCCTTCCGGGAAACGTTGCTTTGTTGTTTCTTCCAATGGCACAACTATCAGTAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCCAACGGAGCAAGGAGAAGAGATGCCTCTGGATCCGGTCAATCATATTCTATCCTGGATTGTATATTTCATGAAATGGATCAAACTTACTACGTCATCGATATGATTTGTTGGCGAGGATATTCTCTTTATGATTGCACAGCCGAGTTTCGGTTCTTCTGGCTCAATTCCAAGCTTGTTGAATCTGGTGCTTGTGAGCCACCTTCATACTATCACAAATATAAATTCAGCCTTGTTCCTGTATATACGTGCGATCAAAATGGTTTTTATGCTGCTTATACTAGAGCGGCACCTTATATCAAGGATGGCCTATTATTTTACAACAAGCATTCCCATTACCAGCCCGGAAATACACCACTTGCATTGGTCTGGAAGGATGAGAGTTGCAGTCGATATGTTATTGACACAGATAGTAATGGACAAGTCCCAAGCCAACAGCAGGTGGTTTTGGAGCTACAAGATGATGGAAAGGTGACTACATCAGATGATCCTCCAGTGGACTTTGGATGCTTAGATGGCAATTTTATCGAAAAGTCAGGGTTGTCTTCAGGTAATCTATTGCGATTTGCAATCGGGGATGGAGGGCTGACAATTGTTGACGGGAGGATTCAGGGGGCAGATTTACAATATGTTGGCAAGGTCAATGGGGCTCGAGCCTTTGCAGATAGTTACTCCAAGGTTATGTTTCAATATGCGGCTCGCCATTCGCCTTTAAAATGGTCGATAGTCCAAAGATTTCTTAATTGCAACGAAGGGAGATCTTGCGGAGACCGGGGCAGCATCCTGTTAACCATGTCGAGAAATACTATTTCCATATTTATATCTGTAGGAACTCATGGTATTCAACCCCCCGGTTCAAGTTCTGAGGTCGGTGCATCTCTCGCTGGCCAATCACTCCGACTCCTTTTTGAGGTAAAATTCTTGACATTACAATTTTCATCAGATTTAATATATAATATTGTACGTTATGAGAAATGTGAAACGATCCAGTTTTTATGCTTTAACCCAAATAGAGTTTAA 1530 44.84 MAPHDIRRPHKRPAISDQQKRREFSLQRQQQNRRDAQQQARSLASTLLSLSSTFNEPSTSESVLEVELNELDSETECSPVLRSQSEFNEPSLKEFDVRQASKLKGSEARKWFSRQLLLPEWMIDVPDRLSEDWYVFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGARRRDASGSGQSYSILDCIFHEMDQTYYVIDMICWRGYSLYDCTAEFRFFWLNSKLVESGACEPPSYYHKYKFSLVPVYTCDQNGFYAAYTRAAPYIKDGLLFYNKHSHYQPGNTPLALVWKDESCSRYVIDTDSNGQVPSQQQVVLELQDDGKVTTSDDPPVDFGCLDGNFIEKSGLSSGNLLRFAIGDGGLTIVDGRIQGADLQYVGKVNGARAFADSYSKVMFQYAARHSPLKWSIVQRFLNCNEGRSCGDRGSILLTMSRNTISIFISVGTHGIQPPGSSSEVGASLAGQSLRLLFEVKFLTLQFSSDLIYNIVRYEKCETIQFLCFNPNRV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 155709 161030 - CmaCh11G000340.1 Cma11g00034 302543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00034 509 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 111 295 - -
Cma11g00034 509 PANTHER SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1 1 411 IPR017336 GO:0005634|GO:0005737|GO:0061015
Cma11g00034 509 Gene3D DNA ligase/mRNA capping enzyme 3 321 - -
Cma11g00034 509 MobiDBLite consensus disorder prediction 1 42 - -
Cma11g00034 509 CDD Snurportin-1_C 111 297 - -
Cma11g00034 509 Coils Coil 26 46 - -
Cma11g00034 509 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00034 K13151 SNUPN, RNUT1; snurportin-1 - csv:101214543 701.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00064 Cma-Chr10:242689 Cma11g00034 Cma-Chr11:155709 1.73E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g111 . . . . . . . . . . . Cma11g00034 . Car11g00031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00058 Cmo11g00036 . . . . . . . . . . . . . . . . . . . . . . . Cme02g02063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011602 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00034 Cma_Chr11 FPKM 5.865644 6.145032 6.571142 6.833342 6.63682 6.059041 6.936803 13.410564 11.953492 11.982663