Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00035 ATGGCCGCAACGAATACGGATGTAGCCGCCAGCGCCGTCGACGACCGTGTCTTGTCCACCGCTCAGCAGATCGTCAAGAGCCTCAATACTCCTAAAGAGGTTCGTGAGGACATGCTCTTGATACTCTCCAGTTTTGATAATCGACTTTCCAGTATCAGTAGTTTGATCAACAGTGACGACTCGAAAACCAAGAACGACAGGTTGGACGCCGCGGAGAAGGTGATTCTTCGTTGGGACCCTAATTTCGATGTGTCGAGACGGTCGCTTAATTGGGAGGACTCGCCGGACGAGGCGGCTGAGTATTTATCGGCGGTGGATGATATAGTCCGGCTAGTAGAAGACCTTTCAATTGGGTCCGAGTCGACTGAGTTCGTAGACCGGGCCGAAAACGCGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTCCGCCATATCCTCATCCAGAGCGCAGTCCCTCTCGACGCCGAGCGGCTCTACGGCTCGATTCGAAGAGTTCACCTCTCGTTTGCGTCCAATTACAGTGAAATTGACGATGAATTCGAGAATTTCGGCGAGGACAGTCGCAGTTCCGGGCGATTCCATGAGCGAGGTGGGACAATTGGAGAAGATTCTTGGGTTGATTTGATCCATCCTGATGCGGCTGTTGATCTATCGGAGATTGCGGACCGTATGATTCGTTCCGGCTACGAAAAGGAATGTGTTCAAGTCTACAGCACGGTTCGTCGCGATGCTTTGGACGAGTGCTTGGCAATTCTTGGCGTCGAACGTCTCAGCATTGAGGAGGTTCAGAAAAGTGACTGGAAATTTTTGGACGAGAAGATGAAGAAATGGATTCAGGCCGTAAAAGTAACAGTCCGGGTGATTTTGGTCGGTGAGAAGAGGCTGTGTGATCAGATCTTTAATGGCGCCAATGAATCCAAGGAGATTTGCTTTAACGAAACAGCCAAAGGGTGTGTGATGCAGCTGTTGAATTTCGGTGAGGCAGTGGCTATTGGGAAGAGGTCACCGGAGAAGCTGTTCCGAATCTTAGATATGTATGATGCTTTGGCCGGTGTTTTGCCCGACTTGGAAGCCATGGTTTCCGATGAGTTTCTGATTAGTGAGGCGCATGAAGTGTTGTCTGGACTGGGAGAAGCAGCCACAGGGACATTTGCAGAGTTTGAGAAAGCCATCGAAAGCGAAAATTCGAAGAAAGCGATGCAAAACGCCGAAATTCACCCGCTTATTCGATATGTAATGAATTATGTGAGATTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTCTGGAAGACGAGGAACGCAGTGTGAACGACAATGACGATGATCTGCAGCTGGAAAGCACGTCGCCTTTAGCTCATAGATTGTTGATGTTGTTATCATCTTTGGAATCCAATCTTGTGGATAAATCAAAACTTTATGAGGATGTTGGGATGCAGTTCATATTTCTAATGAACAATATACTGTATATAGTGAAAAAAGTGAAAGATTGTGAGCTTGCCCAGCTGCTGGGGAGTAACTGGCTTCGCAGGCATAGCGGCCAAATTCGCCAATATGAAACGAGTTACCTTAGAGCCTCTTGGAGCAAGGTCTTGTGTTGCTTAAAGGATGAAGGCATTGGTGGGAGCACGAGCAATGCTGCCTCCAAGACGGCTTTGAAGGAAAAGTTCAAGAATTTCAATGCTGGGTTTGAGGAGATATGCAGGGTCCAGACGTCCTGGAAGGTATCGGATGCTCAACTGCGCGATGAGCTGATAATATCCGTTTCGGAGAAGGTGATCCCGGCGTATCGCTCCTTCTTGGGAAGGTTTAGAAATCAATTAGAGAGCGGAAGGCATTCTGGAAAGTACATAAAGTACACGCCGGACGACTTGGAGAACTCTCTATCAGATTTGTTTGAAGGATCACCTGCTGTTTCACATCACTTGCGAAGAAAGGGTACTTGA 1950 48.1 MAATNTDVAASAVDDRVLSTAQQIVKSLNTPKEVREDMLLILSSFDNRLSSISSLINSDDSKTKNDRLDAAEKVILRWDPNFDVSRRSLNWEDSPDEAAEYLSAVDDIVRLVEDLSIGSESTEFVDRAENAIQMAMCRLESEFRHILIQSAVPLDAERLYGSIRRVHLSFASNYSEIDDEFENFGEDSRSSGRFHERGGTIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKVTVRVILVGEKRLCDQIFNGANESKEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPDLEAMVSDEFLISEAHEVLSGLGEAATGTFAEFEKAIESENSKKAMQNAEIHPLIRYVMNYVRLLVDYSKTMNSLLEDEERSVNDNDDDLQLESTSPLAHRLLMLLSSLESNLVDKSKLYEDVGMQFIFLMNNILYIVKKVKDCELAQLLGSNWLRRHSGQIRQYETSYLRASWSKVLCCLKDEGIGGSTSNAASKTALKEKFKNFNAGFEEICRVQTSWKVSDAQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRHSGKYIKYTPDDLENSLSDLFEGSPAVSHHLRRKGT 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 162015 163964 + CmaCh11G000350.1 Cma11g00035 302544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00035 649 Gene3D Exocyst complex component Exo70 82 643 - -
Cma11g00035 649 SUPERFAMILY Cullin repeat-like 66 635 IPR016159 -
Cma11g00035 649 PANTHER EXOCYST COMPLEX PROTEIN EXO70 50 648 IPR004140 GO:0000145|GO:0006887
Cma11g00035 649 Pfam Exo70 exocyst complex subunit 276 632 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma11g00035 649 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 50 648 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00035 Cma13g00803 CCT
Cma11g00035 Cma13g01074 CCT
Cma11g00035 Cma18g00319 CCT
Cma11g00035 Cma13g01074 ECH
Cma10g00065 Cma11g00035 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00035 Cma-Chr11:162015 Cma18g00319 Cma-Chr18:1702191 0 dispersed
Cma20g00434 Cma-Chr20:2052399 Cma11g00035 Cma-Chr11:162015 1.51E-89 dispersed
Cma10g00065 Cma-Chr10:249523 Cma11g00035 Cma-Chr11:162015 0 wgd
Cma11g00035 Cma-Chr11:162015 Cma13g00803 Cma-Chr13:6823642 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00035 K07195 - csv:101205970 1103.2