Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00036 ATGGTGATGGCGGCAACTAGAGAGGAGAGTCCTAGAAGCCCAGAGGCGAAGCTGGGGATGCAAGTGGAAGATTTATGGGACGTTCAAGAGCCGCAGCTCAGTCCTACCGAGAAGCTTAATGCTTGTTTTGAAAGCATCCCTGTCTCTGCTTTTCCACCTGCCCCTTTTGATCAAGCAATTGAGATAAGATCGGACAGCAGTCTAGCTGAAGCTGTTCAAATTTTGGCCCAACATAAGATCCTCAGCGCCCCTGTGGTGGACGTTGATGCACCTGATCATGCTAGTTGGATTGATAGATACATTGGTGTTGTTGAGTTTGCTGGAATTGCTGTTTGGATTCTTCAGCAGTCGGAACCTCCATCCCCCAGAAGTCCAAGTGATGGAAGTGCTGTGGCTGCAGCAGCAAGTGGGGTGATATCTCCTGTTGAACAGCAGGTACTGGGCTCGGAATCAGCTGCAGCAACCTCGGGAAGCTTTTTCGAATGCTTAACTTCGTCTGAATTGTACAAGAGCACACAGGTGCGAGACATCTCGGGGTCTTTCCGTTGGGCCCCGTTTCTTGCTTTGCAGACGACGAACTCGTTCTTGACCATGCTCTTACTGTTATCAAAGTACAAAATGAAAAGTGTACCAGTGGTGGACTTGGGGGTGGGAAAGATTGAAAACATCATCTCACAATCTGCTGTTATTCACATGTTAGCAGAATGTGCAGGGCTACAATGGTTTGAACGTTGGGGAACAAAGACTCTCTTGGAGCTCGGTCTTCCCATGATGTCGCCCGCTTCTATTGTCAAGGTGTACGAGGATGAGCCCGTTCTACAAGCATTCAAACTTATGAGGAAGAAGAGGGTTGGAGGTGTCCCTGTTATCGAAAGGGGTGGTGGAAACAGGGCAATAGGAAATATTAGTTTAAGAGATATCCATTTCTTGCTCACTGCACCAGAAATCTACCACGATTACAGGTCGATAACAGCGAAAAACTTTCTGACAGCGGTTAGAAGCTACTTAGAGAAGCATGACGAGGTCTCTCCAATGCTGACCAACATGATTACGTGCAAGAAGGACGACACGATAAAGCATCTGATTTTGATGCTCGACTCCAAGAAGATTCACCGCGTGTATGTAGTCGACAGCGATGGTAATCTGCAAGGAGTTATCACTCTTAGAGACATAATCTCGAGGTTAGTCCACGAACCCCACGGTTACTTTGGCGATTTCTTTGATGGTGTTCTGCCATTGCCTCAGGATAGTCGGGTTTGA 1260 47.54 MVMAATREESPRSPEAKLGMQVEDLWDVQEPQLSPTEKLNACFESIPVSAFPPAPFDQAIEIRSDSSLAEAVQILAQHKILSAPVVDVDAPDHASWIDRYIGVVEFAGIAVWILQQSEPPSPRSPSDGSAVAAAASGVISPVEQQVLGSESAAATSGSFFECLTSSELYKSTQVRDISGSFRWAPFLALQTTNSFLTMLLLLSKYKMKSVPVVDLGVGKIENIISQSAVIHMLAECAGLQWFERWGTKTLLELGLPMMSPASIVKVYEDEPVLQAFKLMRKKRVGGVPVIERGGGNRAIGNISLRDIHFLLTAPEIYHDYRSITAKNFLTAVRSYLEKHDEVSPMLTNMITCKKDDTIKHLILMLDSKKIHRVYVVDSDGNLQGVITLRDIISRLVHEPHGYFGDFFDGVLPLPQDSRV 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 164586 167178 - CmaCh11G000360.1 Cma11g00036 302545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00036 419 SUPERFAMILY CBS-domain pair 259 405 IPR046342 -
Cma11g00036 419 ProSiteProfiles CBS domain profile. 53 121 IPR000644 -
Cma11g00036 419 ProSiteProfiles CBS domain profile. 345 403 IPR000644 -
Cma11g00036 419 Gene3D - 38 240 IPR046342 -
Cma11g00036 419 ProSiteProfiles CBS domain profile. 258 320 IPR000644 -
Cma11g00036 419 SUPERFAMILY CBS-domain pair 31 234 IPR046342 -
Cma11g00036 419 Gene3D - 246 398 IPR046342 -
Cma11g00036 419 SMART cbs_1 348 396 IPR000644 -
Cma11g00036 419 SMART cbs_1 185 234 IPR000644 -
Cma11g00036 419 SMART cbs_1 58 114 IPR000644 -
Cma11g00036 419 SMART cbs_1 262 312 IPR000644 -
Cma11g00036 419 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 8 419 - -
Cma11g00036 419 Pfam CBS domain 342 396 IPR000644 -
Cma11g00036 419 Pfam CBS domain 258 307 IPR000644 -
Cma11g00036 419 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 419 - -
Cma11g00036 419 CDD CBS_pair_SF 263 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00036 - - - cmax:111495538 798.119
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00066 Cma11g00036 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00389 Cma-Chr2:1971457 Cma11g00036 Cma-Chr11:164586 2.98E-12 dispersed
Cma11g00036 Cma-Chr11:164586 Cma18g01170 Cma-Chr18:9376211 9.96E-86 dispersed
Cma10g00066 Cma-Chr10:252314 Cma11g00036 Cma-Chr11:164586 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003995 2 1 2 1 2 1 2 1 0 2 1 1 2 2 2 2 0 2 2 1 2 1 1 1 1 0 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00036 Cma_Chr11 FPKM 57.016354 59.756443 66.502846 66.911934 10.601507 12.29388 10.537429 107.299286 110.213089 112.106476