Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00037 ATGTTTACTGCTAACCACTGCTGTGGGCGATGCTACCGTGCGCTGGACCGCACTTTCCGGCCTGCTTTGTGGCACCATTTCATAGGCTCTTCTCCTGCTACCGTGGCGGCCATAGCCTCAATTTTCGTCATCTCTTATGAATATTCTGGTTTGACCATTGATTCCCATTATATTATCAATTGTAGTGCAACAGCTTTTAAAGGTTTCTCGCCCATGGCGTCCTCCGCTTCTTCCTCGTCTCATGGCGCTTCCAAGTTCCTTGGCGACCTTCCTTCCCGTGGCTACTTTTCGTCTTCCGTCCCCTCCTCAAATCCTGGAAGTATGCGAGTCTATATCTGCCTTCATGATACCTCACCACCAGAGGACCAAGAAATAAAGACTAACCAGCAGAATATACTTATTCGATCTTTGATGCTTAAAAATTCCAGCTCAAAGGATGGAAAGGGAGTAGCTGCAGCCGAATCCTCTCGAAAGAGGGCTGGTGAAAAAATTTCAGATGGCAGAGCAAAGAGGACTGCCCAAGTAAGTTCAGGAAAAGGAGCATCAAACAGTGAAACACCGAGTAAGGATTTCCAGAATTTGACTGTAGAGAGGCTGCGTGCGCTTCTCAAGGCCAGAGGCCTTTCGCTCAAAGGAAAGAAGGCAAGTATATTATATTGTAATCAATGTGGAGATGAATTAATTGCCCGCCTTAGAAGCGCTGATGGTTAG 711 46.84 MFTANHCCGRCYRALDRTFRPALWHHFIGSSPATVAAIASIFVISYEYSGLTIDSHYIINCSATAFKGFSPMASSASSSSHGASKFLGDLPSRGYFSSSVPSSNPGSMRVYICLHDTSPPEDQEIKTNQQNILIRSLMLKNSSSKDGKGVAAAESSRKRAGEKISDGRAKRTAQVSSGKGASNSETPSKDFQNLTVERLRALLKARGLSLKGKKASILYCNQCGDELIARLRSADG 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 167509 171990 + CmaCh11G000370.1 Cma11g00037 302546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00037 236 SUPERFAMILY SAP domain 188 218 IPR036361 -
Cma11g00037 236 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 74 234 - -
Cma11g00037 236 Pfam SAP domain 191 216 IPR003034 -
Cma11g00037 236 MobiDBLite consensus disorder prediction 170 191 - -
Cma11g00037 236 MobiDBLite consensus disorder prediction 151 169 - -
Cma11g00037 236 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 74 234 IPR033575 GO:0032434
Cma11g00037 236 Gene3D SAP domain 188 218 IPR036361 -
Cma11g00037 236 Pfam Det1 complexing ubiquitin ligase 85 140 IPR018276 -
Cma11g00037 236 MobiDBLite consensus disorder prediction 143 191 - -
Cma11g00037 236 SMART sap_9 191 235 IPR003034 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00037 - - - csv:101215024 253.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00037 Cma-Chr11:167509 Cma19g00481 Cma-Chr19:5755980 2.86E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g118 . . . . . . . . . . . Cma11g00037 . Car11g00034 . . Cpe04g01612 . . . . . . . Cla06g01737 Cam06g1927 Cec06g1978 Cco06g1981 Clacu06g1883 Cmu06g1826 Cre06g2640 Cone2ag0971 Cone16ag0019 . . . . . . . . . . Bpe07g00888 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01637 Csa01g00062 Chy02g02657 Cme02g02060
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007475 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 0 1 2 2 1 1 1 1 1 1 0 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00037 Cma_Chr11 FPKM 9.846782 10.841893 8.301426 7.203036 14.687325 14.44467 13.833129 11.050967 13.378851 13.679294