Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00045 ATGACCGATGACGTAGCTTTCGTCTTGCATAAACATTATCCCATGTGCATAGCGTGGTCCATGTCGTGGTGTTATATTAATGGGCTGCGGACAAGCAGAAACGCATACACAAACACAAGAATACAAGGCAGGGAAGCGCAGTGGCAGGGCAGCTTGTTGCAGGCGGCGCCAATGGCGAAGCCAAATCGTGTAACCAATTCTTCTGTAGCCTCTGATTTCATCGACTTCTTGAACGCTTCCCCGACTGCTTTCCACGCCGTTGAGGAGGCAAAGAAGCGGCTGGTAGTAGTGGGATATGAACAACTCTCTGAGACAGAGGATTGGAAATTAGAAGCCGGCAAGAAGTACTTCTTCACCAGAAATCATTCCGCCATCATCGCTTTCGCGATCGGTAGAAAATACGTTGCTGGGAATGCATTTCATATTGTTGGTGCTCATACAGATAGCCCTTGTTTGAAATTGAAGCCTATAAGCAAGATTACGAAGGGTGGATTTCTGGAAGTCGGTGTTCAAATTTATGGGGGTGGGTTGTGGCACACATGGTTTGACCGGGATTTAACAGTTGCAGGAAGGGTGATTCTGAGGGAAGAGAAAAATGGTTCTGTTTCATATGTTCCTCGACTTGTTCGAATTTTGGAGCCCATATTGAGAATCCCCACATTAGCAATTCACTTGGACAGGGATGCAGTTGCATTTGCGGTGAACACAGAGACGCAACTTCTTCCAATTTTGGCCACGACTATTAAGGGGGAATTGAATAAAATTGTTTCCAAAAATGATGCCCAAAATGGTGGAGAGCATGCAGATCAGAAGTCAACTCCTACTAGCTCAAAGCATCACTTGCTTCTGTTAGAGATACTTGCGGAGCAACTTGGCTGTGAACCAGATGACATATTTGATTTTGACTTGCAAGTATGTGATGCTCAACCAAGTGCGATTGGTGGTGCCAAGAGGGAATTCATATTCTCTGGAAGGCTCGATAATTTATGCATGACATTTTGCTCTTTGAAGGTATTTGTTATGCCGGCTTGCTTAAGGGCATTGATTGACAGTACATCTTCTGAAAGTAGCCTTGAGAATGAGGCTGGTATCAGAATGGTGGCCCTGTTTGACAACGAGGAGGTTGGATCTAATTCAGCCCAGGGGGCTGGGTCTCCAGCAATGCATGATGCTTTATCACGAATCACGACTTCCTTCAGCCCATTACCTTCGCTGGTTGAAAAGGCTATCCAGAAAAGTTTCCTGGTCTCTGCTGACATGGCGCATGCATTGCACCCCAATTATATGGAAAAGTATGAAGAAAATCATCGGCCCAAGTTCCATGGAGGACTGGTCATCAAGATGAATGCAAATAATAAATACGCAACTAATGCAGTCACTGCAACCATATTCCGGGAGTTCGCTTTAAAACATGACCTTCCTGTCCAGGATTTCGTGGTCCGCAATGACATGGCTTGTGGTACCACCATTGGCCCCATCCTTGCAAGTGGCTTAGGCATACGAACAGTTGATGTGGGAGCACCGCAGCTATCAATGCACAGTATTCGAGAAGTTTGTGGCCACAAGCCCAAGTATCCGTCATCGGCGAATCTATATTCACCTTCAGCTCCTTCCTTGGAGCCAACGCAAGCTGAGACAGTGAAGTGGAGCTCAGGAGTCGAGATCTCAGACATGGCGGCAACGAATGAAGCAAAAAGTAAGAGCAATTCTGTTGTGGATGATCTTCTCCAGTTCTTAAACGCTTCGCCGACTGCTTTCCACGCCGTTGATGAGGCAAAGAAGCGTCTGCGAAGTGTTGGATATGAACAAGTATCTGAAAGAGAGGACTGGAAATTAGAAGCTGGAAAGAAGTACTTCTTTACCAGAAACCATTCGACCATCGTTGCCTTCGCGATTGGTAAAAAATATGTTGCTGGGAATGGATTTCATATTGTTGGTGCTCATACCGACAGCCCTTGTTTAAAACTGAAGCCTGTGTCCAAGGTAACAAAGGGTGGTTATCTGGAAGTTGGCGTTCAAACATATGGGGGTGGATTGTGGCACACATGGTTTGATCGTGACTTAACAGTCGCAGGAAGGGTGATTATAAAGGAACAAAAAAATGGTTCTGTATCATATATTCATCGACTTGTTCGAGTTGAGGATCCCATAATGAGGATCCCCACACTAGCGATTCACTTGGACAGGGGCGCGGATGGATTTAAGGTCAACACACAGAGTCATCTTCTCCCAGTCTTGGCAACAAGTATTAAGGGGGAATTGAATAAAGTTGTTACCAAGAATGATGTACAAGACAATGGAGAGACAACAGAATCGAAGTCAAGTCCTAATAACTCAAAGCATCACTCGCTTCTATTACAGCTACTTGCTAATCAGCTTGGCTGTGAACCAGATGACATATGCGATTTTGAATTGCAAGCCTGTGACATGCAACCAAGTTTGGTTGGTGGTGCCCAGAAGGAATTCATTTTCTCTGGAAGGCTCGATAATTTATGCATGTCATTTTGCTCTTTGAAGGCGCTGATTGACAGTACATCTTCTCAAACAAGCCTTGAGCATGAGACTGGTGTCAGAATGGTGGCCTTGTTTGATCATGAGGAGGTTGGATCTAATTCAGCCCAGGGAGCTGGTTCTCCCGCCATGCTTAATGCTTTATCACGAATTACAAACTCCTTCAGCTCAGACTTTTCGCTTATTGAGAAAGCTATCCAGAGAAGTTTCCTGGTCTCAGCTGATATGGCGCATGCATTACACCCTAATTATATGGATAAGCATGAAGAAAATCATCAGCCCAAGTTGCACGGAGGGTTGGTCATTAAGAGCAATGCAAATCAACGATACGCAACCAATGCAATCACTTCGTTCATATTCAGGGAATTGGCTGTGAATCATAACATTCCTGTTCAGGATTTTGTGGTTCGTAATGACATGGCTTGTGGTTCAACCATCGGCCCCATTCTTGCAAGCGGTGTAGGTATACGAACAGTAGACGTTGGAGCACCACAGCTATCAATGCACAGTATTCGGGAAATGTGTGCTACAGATGATGTCGACCACTCATATGAGCATTTTAAGGCCTATTACGAAGAGTTCTCTAATCTTGACCAGAAGATCACAGTCGATATGTAG 3129 45.03 MTDDVAFVLHKHYPMCIAWSMSWCYINGLRTSRNAYTNTRIQGREAQWQGSLLQAAPMAKPNRVTNSSVASDFIDFLNASPTAFHAVEEAKKRLVVVGYEQLSETEDWKLEAGKKYFFTRNHSAIIAFAIGRKYVAGNAFHIVGAHTDSPCLKLKPISKITKGGFLEVGVQIYGGGLWHTWFDRDLTVAGRVILREEKNGSVSYVPRLVRILEPILRIPTLAIHLDRDAVAFAVNTETQLLPILATTIKGELNKIVSKNDAQNGGEHADQKSTPTSSKHHLLLLEILAEQLGCEPDDIFDFDLQVCDAQPSAIGGAKREFIFSGRLDNLCMTFCSLKVFVMPACLRALIDSTSSESSLENEAGIRMVALFDNEEVGSNSAQGAGSPAMHDALSRITTSFSPLPSLVEKAIQKSFLVSADMAHALHPNYMEKYEENHRPKFHGGLVIKMNANNKYATNAVTATIFREFALKHDLPVQDFVVRNDMACGTTIGPILASGLGIRTVDVGAPQLSMHSIREVCGHKPKYPSSANLYSPSAPSLEPTQAETVKWSSGVEISDMAATNEAKSKSNSVVDDLLQFLNASPTAFHAVDEAKKRLRSVGYEQVSEREDWKLEAGKKYFFTRNHSTIVAFAIGKKYVAGNGFHIVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIKEQKNGSVSYIHRLVRVEDPIMRIPTLAIHLDRGADGFKVNTQSHLLPVLATSIKGELNKVVTKNDVQDNGETTESKSSPNNSKHHSLLLQLLANQLGCEPDDICDFELQACDMQPSLVGGAQKEFIFSGRLDNLCMSFCSLKALIDSTSSQTSLEHETGVRMVALFDHEEVGSNSAQGAGSPAMLNALSRITNSFSSDFSLIEKAIQRSFLVSADMAHALHPNYMDKHEENHQPKLHGGLVIKSNANQRYATNAITSFIFRELAVNHNIPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCATDDVDHSYEHFKAYYEEFSNLDQKITVDM 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 199106 209339 - CmaCh11G000450.1 Cma11g00045 302554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00045 1042 CDD M18_DAP 70 520 - -
Cma11g00045 1042 SUPERFAMILY Zn-dependent exopeptidases 68 522 - -
Cma11g00045 1042 SUPERFAMILY Zn-dependent exopeptidases 564 1029 - -
Cma11g00045 1042 SUPERFAMILY Aminopeptidase/glucanase lid domain 654 806 - -
Cma11g00045 1042 PANTHER ASPARTYL AMINOPEPTIDASE 565 1041 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 PANTHER ASPARTYL AMINOPEPTIDASE 66 521 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 Gene3D Zn peptidases 574 1028 - -
Cma11g00045 1042 SUPERFAMILY Aminopeptidase/glucanase lid domain 152 304 - -
Cma11g00045 1042 Pfam Aminopeptidase I zinc metalloprotease (M18) 578 1028 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 Pfam Aminopeptidase I zinc metalloprotease (M18) 76 523 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 Gene3D Zn peptidases 72 522 - -
Cma11g00045 1042 PANTHER ASPARTYL AMINOPEPTIDASE 565 1041 - -
Cma11g00045 1042 PANTHER ASPARTYL AMINOPEPTIDASE 66 521 - -
Cma11g00045 1042 Gene3D Aminopeptidase i, Domain 2 653 812 IPR023358 GO:0004177
Cma11g00045 1042 Gene3D Aminopeptidase i, Domain 2 151 310 IPR023358 GO:0004177
Cma11g00045 1042 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 995 1010 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 714 731 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 906 922 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 675 695 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 642 658 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 PRINTS Aminopeptidase I zinc metalloprotease (M18) signature 863 881 IPR001948 GO:0004177|GO:0006508|GO:0008270
Cma11g00045 1042 CDD M18_DAP 572 1029 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00045 K01267 DNPEP; aspartyl aminopeptidase [EC:3.4.11.21] - csv:101216468 893.264
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00045 Cma-Chr11:199106 Cma18g00944 Cma-Chr18:8079446 2.50E-08 dispersed
Cma11g00045 Cma-Chr11:199106 Cma04g01430 Cma-Chr4:7289993 5.71E-168 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g144 . Blo16g00264 . . . . . . . . . Cma11g00045 . Car11g00040 . . Cpe04g01605 Bhi02g00539 . . . Hepe09g0063 . . Cla06g01730 Cam06g1921 Cec06g1971 Cco06g1975 Clacu06g1877 Cmu06g1819 Cre06g2634 . Cone16ag0029 . . . . . . . . . . . Bpe15g00210 Bma03g01265 . . . Cmo11g00046 . . . . . . . . . . . . . . . . . . . . Lsi06g01628 Csa01g00070 Chy02g02650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003516 0 2 1 1 1 2 1 2 2 2 1 2 1 1 1 2 2 2 1 2 2 1 2 2 1 2 2 4 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00045 Cma_Chr11 FPKM 23.858257 26.924751 36.636902 34.245308 122.206505 123.041359 125.648254 40.065472 37.508606 39.035889