Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00049 ATGGCACCGACTGTTCCTATTGAGTTTGCTGGACAGAAGGAATCGAGAAAGTACTCACTTTCACAGGTAATGGGGAAATCGAGGAAATATTCCAAAGCTCTTTCTTTTGGTTTTGTTCCAGATTACCGAGATGCTGTGGTAATGGTTCGCGAATCAGAAGGGTTAGGGAGCTCTGGACGAATGGATACTGGAATCTCATCTCTAGATGATCCACGGGCCTTCAAGAGGAAGCGTGTTAGTATGAATGCAAATGGTTATGATTGTTTTGTTGCTCCTCTTCAAGTTTTTTCTATATCAACATTGTCTCGATCTGAAAGGAAAGGTTTAGAGATAAGGTTAAAGTTAGAACTTGAGCAGGTCCGAGTTCTGCAAAAGAAAGCTTCTGACGTTAGTTCGAGTTTGGCTGTTTCATCGTTGAGTAATATTCAGAGTTATAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTCTAATAGGTTGTCCGTGGTATCGGTTCCTCCTGCTAAAAAGCTAGTGCCCTCTGGGCGCAATGGCCCTTCAGCTGTAAGAAGCTCATCTGGGCGGTTTGAGTCTGTTAAACCAGCTGCTGTATCTGCTTCCTCGACAGCATTGTTATTGAAACAATGTGAACAGCTGCTGCCTCGCTTGATGTCGCATCCATTTGGTTGGGTTTTTAACACCCCAGTTGATGTGGTCAAGTTGAATATTCCAGATTATTTCACTGTTATAAAGCATCCAATGGATCTGGGCACTGTGAAGTCTAAGATTACTGCAGGAGAATACGCACATCCATTGGATTTTGCTGCAGATGTTCGACTTACTTTTTCAAATGCGATGACTTACAACCCTCCCGGGAATGACGTCCATATCATGGCTAAGACCCTAAGTAAATATTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTAACAACTGAAGAACAACGTCAAGTATCTTCAGCCACGATTGTTTATAAGGAAGCTGAAAGTACTCTGCCCGTGTCACGTTCAAAAAAGACAAAAATCCCTACTAATAGCCCTGATATTCAGCCAAACAGTGTGTCAAAAATCATGACTGACCAGGAGAAGCATAAACTGAGTGTGGAGTTGGAGGCGTTGCTGGGAGAATTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATCCTCTAGCGGGCGAGGAGGAGATTGAAATTGATATTGATACTCTTACTGATGATACCTTGTTTGCTTTGAAGAAGAAATTGGACGACTATATAATGGAAAAGCAGAAACGCACAACGGATGAACCTTGTGTAGTGGAGCAGCTTCACAACGAATCAGGATTGAGCAATTCATCAATGCCACCCTGTAGAGGAAATGGTCGGATTGATGACGATGTAGACATTGTTGGTGGAAATGACCCACCTGTTTCAAGCTATCCTCCAATAGAAATAGAGAAAGATGCAGTCCATAGAGATAGTAAATGCAATCATTCCAGTAGCTCGAGTAGTGAATCAGGTTCTACATCAAGTGATTCTGGCTCAGATAGTTTATCGGCGAGTGAATCTAATGCTGCTAAAGCATTAGATAGTGACGTGGCTCCAAAGGAAATTTTGTCTTCTGAAACAAATTTGGATCAGAAGCAATATGAAGTTGGTGATTTAGAAATTGGAAATTGTGAGTATCAGCTGTTTTTCCATAACTGTGCAGTTGAAGAAAATGGAATTGGTCTAGTTGAGCAATCTGCTCAGGGCAATACAAGCACTACTGACACGGATAGCTACCAAGAGGAGGGGGAGGGTGCTCCATCTAAGAGGCAAGTCTCCCCTGACAGGCTATACCGTGCAGCTTTATTGAGAAACCGTTTTGCCGACACGATACTGAAAGCTCGAGAAAAGGCACTTGAAAAGGGTGACAAGCGGGATCCTGAAAAAGTGCGAATGGAGAGGGAGGAACTTGAAAGACAGAAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCCAAAGAGGCAGAGGATGCTCACAGGAAGGCAGAAGCAGAAGCTGCGGCTGAAGCAAAGAAGAAAAGGGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAGGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTAGAAATGCTTAGGGCTTCGAACGACGATCAGCTACCAAACTTCACAGAGAAGTCCAGCCCAGAATATTCTCAGAATGAATATGGCAGTTTCAAGCTTAAAGGTAGTAATCCCTTGGAACAACTTGGTTTGTACATGAAGGTGGATGATGAAGAGGAAGAGTATGAAAGTGAACCACCACCACCCCAGAGTGTTAACAAGCCAGCAAATGATGTTGAAGACGGTGAAATCAATTAG 2388 43.26 MAPTVPIEFAGQKESRKYSLSQVMGKSRKYSKALSFGFVPDYRDAVVMVRESEGLGSSGRMDTGISSLDDPRAFKRKRVSMNANGYDCFVAPLQVFSISTLSRSERKGLEIRLKLELEQVRVLQKKASDVSSSLAVSSLSNIQSYSDQHRGAPPETSNRLSVVSVPPAKKLVPSGRNGPSAVRSSSGRFESVKPAAVSASSTALLLKQCEQLLPRLMSHPFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYAHPLDFAADVRLTFSNAMTYNPPGNDVHIMAKTLSKYFEVRWKTIEKKLPVTTEEQRQVSSATIVYKEAESTLPVSRSKKTKIPTNSPDIQPNSVSKIMTDQEKHKLSVELEALLGELPESIIDFLKEHSSNPLAGEEEIEIDIDTLTDDTLFALKKKLDDYIMEKQKRTTDEPCVVEQLHNESGLSNSSMPPCRGNGRIDDDVDIVGGNDPPVSSYPPIEIEKDAVHRDSKCNHSSSSSSESGSTSSDSGSDSLSASESNAAKALDSDVAPKEILSSETNLDQKQYEVGDLEIGNCEYQLFFHNCAVEENGIGLVEQSAQGNTSTTDTDSYQEEGEGAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQKREEKARLQAEAKEAEDAHRKAEAEAAAEAKKKRELDREAARQALLKMERTVDINENSQFMEDLEMLRASNDDQLPNFTEKSSPEYSQNEYGSFKLKGSNPLEQLGLYMKVDDEEEEYESEPPPPQSVNKPANDVEDGEIN 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 217982 223266 + CmaCh11G000490.1 Cma11g00049 302558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00049 795 ProSiteProfiles NET domain profile. 350 431 IPR027353 -
Cma11g00049 795 MobiDBLite consensus disorder prediction 726 749 - -
Cma11g00049 795 Coils Coil 648 693 - -
Cma11g00049 795 MobiDBLite consensus disorder prediction 717 795 - -
Cma11g00049 795 Gene3D - 190 324 IPR036427 GO:0005515
Cma11g00049 795 ProSiteProfiles Bromodomain profile. 217 289 IPR001487 GO:0005515
Cma11g00049 795 Pfam Bromodomain extra-terminal - transcription regulation 360 420 IPR027353 -
Cma11g00049 795 MobiDBLite consensus disorder prediction 632 692 - -
Cma11g00049 795 SUPERFAMILY Bromodomain 184 311 IPR036427 GO:0005515
Cma11g00049 795 PANTHER TRANSCRIPTION FACTOR GTE10 25 782 - -
Cma11g00049 795 PANTHER TRANSCRIPTION FACTOR GTE8 25 782 - -
Cma11g00049 795 SMART bromo_6 198 308 IPR001487 GO:0005515
Cma11g00049 795 MobiDBLite consensus disorder prediction 443 532 - -
Cma11g00049 795 MobiDBLite consensus disorder prediction 494 524 - -
Cma11g00049 795 MobiDBLite consensus disorder prediction 580 595 - -
Cma11g00049 795 PRINTS Bromodomain signature 220 233 IPR001487 GO:0005515
Cma11g00049 795 PRINTS Bromodomain signature 252 270 IPR001487 GO:0005515
Cma11g00049 795 PRINTS Bromodomain signature 236 252 IPR001487 GO:0005515
Cma11g00049 795 PRINTS Bromodomain signature 270 289 IPR001487 GO:0005515
Cma11g00049 795 Gene3D - 355 431 IPR038336 -
Cma11g00049 795 MobiDBLite consensus disorder prediction 580 607 - -
Cma11g00049 795 Pfam Bromodomain 209 293 IPR001487 GO:0005515
Cma11g00049 795 CDD Bromo_plant1 205 303 IPR037377 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00049 - - - csv:101217420 1137.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01359 Cma-Chr3:8651171 Cma11g00049 Cma-Chr11:217982 1.04E-20 dispersed
Cma10g00073 Cma-Chr10:291739 Cma11g00049 Cma-Chr11:217982 0 dispersed
Cma11g00049 Cma-Chr11:217982 Cma11g01678 Cma-Chr11:11046967 2.92E-50 dispersed
Cma11g00049 Cma-Chr11:217982 Cma11g01486 Cma-Chr11:9779687 0 wgd
Cma11g00049 Cma-Chr11:217982 Cma14g00701 Cma-Chr14:3557384 1.42E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00049 Cma_Chr11 FPKM 12.571189 14.022988 15.260258 15.49414 12.069668 11.499533 11.076331 22.621922 22.366148 20.634392