Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00055 ATGGCGGCAACTACACTCTCCGTCTCCTCAGCTTCGATTTCTACTTCAAAAACGCCTTGCCTTCCCAGTTCCACCACCGTTGCTTATTTCAAACCCAATACCACAAGTTTATCCACTTCCATTGTGGGCAAACGGATACGTTTGTATCGATCTTCGAGAACCAGGCCAATCGGCGCTAAGAATGCTTCTATTGGGATCAATTGCCAGGCTTCTTCCTCTGTTCTTCCGTCTGCCCTTCTTTTCGATTGCGATGGGGTTCTCGTCGATACTGAAAAGGATGGCCATCGGATTTCCTTCAATGAGACTTTTCAAGAGAAAGAATTGGGCGTTACCTGGGATGTAGATTTGTATGGTGAATTACTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTACTTCAATAAAGTTGGATGGCCTGAAAAGGCTCCAAAGAGTGAAGATGAAAGAAAGACATTCATAGCTGGACTTCACAAGCGAAAGACAGATCTGTTCATGGCTCTTATTGAGAAGCAATTGCTACCCCTTCGACCTGGTGTTGCAAAGTTAATAGATCAGGCATTAGGAAACGGAGTGAAAGTAGCTGTTTGTAGCACTTCTAATGAGAAGGCGGTCTCTGCGATAGTATCATTTTTACTGGGACCTCAACGAGCTGAGCAGATCAAGATATTTGCGGGAGACGTAGTGCCTCGAAAGAAGCCTGACCCAGCTATCTATATTTTAGCAGCCAACACCCTGGGCGTCGATCCTTCTAGTTGTGTTGTGGTGGAGGATAGTGCCATTGGCCTTGCTGCTGCCAAATCGGCTGGAATGAAGTGCATAGTGACAAAGAGTGGGTACACGGCCGAGGAAGACTTTGTAAATGCAGATGCAGTGTTTGACTGCATTGGAGATCCCCCAGAAGAGCGTTTTGATTTGGCATTCTGTGGAAGCCTTCTTGAGAAGCAGACAGAAGTGATTTCATTACATTCGAATTCTCGTGCTCAACATGTTCCTGCTCTTCTGCTTTCTATCCTCAAGAGGATGGCGATCGAATTAATTCAGGTGATCGCCGACGAAATAATCTCGCCGTCTTCTCCAACTCCGCCGTCGCGCAGAAACCTCAAGTTTTCGCTGCTCGACCAGATTTCGCCGTCCAATTATACTCCGATCATCTTCTTCTATGCCGCCGTTGAAAATCCCGGGGCCGATCGGTTTTCTGGAAGTCGTCAGTTGAAGAAGTCTTTATCGGAGATTTTGACTCTCTTCTATCCTTTCGCCGGAACTTTGTCAAGTGCTGGATATTCCGTTGATTGCAACGACAGAGGCGTTGAGTATTCTGAAGCACGAGTCGGTTGCGAGTTATCGGAAGTGGTGGAAAATCCTGATTTCAAAGTCCTTCATCGGTTGCTGCCGTTTGAGCCTTACGCCAATTCGGTCGAACCGGAGATCGGAAGAGATGTAATTCTCGCCGTCCGATTGAATTTGTTTGACTGCGGCGGAGTGGCGATTGCTCTGTGTATCACTCATAAGCTCGTCGACGGATTCTCCGCCACCGTATTTGTCAGAGAGTGGGCAGCCATCAATCGAGGAGATAGCGATCAGGTTTCGGAACCCTTATTTGACAGTGCAAAGTACTTTCCGCCGAAGGAAATTCCAGGATTGAAGAGAAGCAAAGTTGTTCAAAACGACAAGATCGTGACGAAAAGATTCGTGTTCGACAAAGCAAACATAGCCGCACTCCGGCACGAGGCCGCCGCTGGATCTCTGGAGAAGCCGCCAACGAGAGTGGAAGCCGTTTCAGCATTCTTATGGAAGCGATTCATGGAGATAAATCCACATTCAGAACAAGAAAAAGTCTTCGCCGCAGTCCACGCCGTGAACATACGCGGCAAGATGGATCCGCCATTACCGCCGAACTCCTCCGGCAACCTCTGGTGGTTCGCCATCGCCGTCGCAGAGACTGAAATCGAAAAGCGACATCAATACTTAGTGAACCAGATAAGAAACGCAATAGAAGAGATCGACAGCGATCTCGTGAGGAAGTTACAGCATGCCGGCGTGCCGTCGCATATGTGGAGCAAGATGGGGAAACACGGGCACGCGGCGGGCGGAGAGGTGGAGTTCTGCAACTTCACGAGCTGGTGTAGGTTTCCGGTATATGAAGCGGACTTTGGGTGGGGGAAGCCGTCGTGGGTTTGCAGTCCGAGCCGGCCGTATAAGAATGTGGTGGTTCTGATGACAACCAGAGACGGCGACGGGATTGAGGCTTGGGTAACGCTCAAGGAAGAAGATATGGAGTTATTCCAACGAGATTCTGAGTTGCTTTCCTTTACATTTTGA 2322 48.66 MAATTLSVSSASISTSKTPCLPSSTTVAYFKPNTTSLSTSIVGKRIRLYRSSRTRPIGAKNASIGINCQASSSVLPSALLFDCDGVLVDTEKDGHRISFNETFQEKELGVTWDVDLYGELLKIGGGKERMTAYFNKVGWPEKAPKSEDERKTFIAGLHKRKTDLFMALIEKQLLPLRPGVAKLIDQALGNGVKVAVCSTSNEKAVSAIVSFLLGPQRAEQIKIFAGDVVPRKKPDPAIYILAANTLGVDPSSCVVVEDSAIGLAAAKSAGMKCIVTKSGYTAEEDFVNADAVFDCIGDPPEERFDLAFCGSLLEKQTEVISLHSNSRAQHVPALLLSILKRMAIELIQVIADEIISPSSPTPPSRRNLKFSLLDQISPSNYTPIIFFYAAVENPGADRFSGSRQLKKSLSEILTLFYPFAGTLSSAGYSVDCNDRGVEYSEARVGCELSEVVENPDFKVLHRLLPFEPYANSVEPEIGRDVILAVRLNLFDCGGVAIALCITHKLVDGFSATVFVREWAAINRGDSDQVSEPLFDSAKYFPPKEIPGLKRSKVVQNDKIVTKRFVFDKANIAALRHEAAAGSLEKPPTRVEAVSAFLWKRFMEINPHSEQEKVFAAVHAVNIRGKMDPPLPPNSSGNLWWFAIAVAETEIEKRHQYLVNQIRNAIEEIDSDLVRKLQHAGVPSHMWSKMGKHGHAAGGEVEFCNFTSWCRFPVYEADFGWGKPSWVCSPSRPYKNVVVLMTTRDGDGIEAWVTLKEEDMELFQRDSELLSFTF 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 275086 280862 + CmaCh11G000550.1 Cma11g00055 302564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00055 773 MobiDBLite consensus disorder prediction 1 20 - -
Cma11g00055 773 CDD HAD_CbbY-like 78 278 - -
Cma11g00055 773 Pfam Transferase family 347 768 - -
Cma11g00055 773 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 75 302 - -
Cma11g00055 773 SUPERFAMILY HAD-like 77 298 IPR036412 -
Cma11g00055 773 Gene3D Putative phosphatase; domain 2 90 174 IPR023198 -
Cma11g00055 773 PANTHER F21J9.9 347 772 - -
Cma11g00055 773 Pfam Haloacid dehalogenase-like hydrolase 79 275 IPR041492 -
Cma11g00055 773 Gene3D - 556 770 IPR023213 -
Cma11g00055 773 PANTHER VINORINE SYNTHASE-LIKE 347 772 - -
Cma11g00055 773 SFLD phosphoglycolate phosphatase 75 302 - -
Cma11g00055 773 Gene3D - 345 547 IPR023213 -
Cma11g00055 773 Gene3D - 78 295 IPR023214 -
Cma11g00055 773 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 161 275 IPR006439 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00055 - - - mcha:111007042 546.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00810 Cma-Chr3:6203983 Cma11g00055 Cma-Chr11:275086 2.50E-06 dispersed
Cma07g00548 Cma-Chr7:2362255 Cma11g00055 Cma-Chr11:275086 1.82E-47 dispersed
Cma11g00055 Cma-Chr11:275086 Cma18g00117 Cma-Chr18:579404 4.60E-75 dispersed
Cma16g00591 Cma-Chr16:3059474 Cma11g00055 Cma-Chr11:275086 6.99E-07 dispersed
Cma11g00055 Cma-Chr11:275086 Cma11g00056 Cma-Chr11:281707 1.09E-95 tandem
Cma03g01477 Cma-Chr3:9210605 Cma11g00055 Cma-Chr11:275086 1.33E-19 transposed
Cma11g00392 Cma-Chr11:1948578 Cma11g00055 Cma-Chr11:275086 6.42E-09 transposed
Cma11g01886 Cma-Chr11:12503760 Cma11g00055 Cma-Chr11:275086 1.54E-12 transposed
Cma11g00055 Cma-Chr11:275086 Cma13g00785 Cma-Chr13:6736240 1.62E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g885 . . Bda06g00630 . . . . Bma12g01067 . . . Cma11g00055 . Car11g00049 Sed08g0057 . Cpe04g01597 Bhi02g00571 Tan09g2336 Cmetu02g1589 . Hepe09g0075 . . Cla06g01719 Cam06g1909 Cec06g1959 Cco06g1963 Clacu06g1865 Cmu06g1807 Cre06g2622 . . Cone13ag0201 Cone19ag0189 . . . . . Blo15g00238 . . Bpe07g00870 . . . . . Cmo11g00057 . . . . . . . . . . . . . . . . . . . . Lsi06g01613 Csa01g00083 Chy02g02637 Cme02g02036
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009837 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00055 Cma_Chr11 FPKM 5.583768 7.229661 9.676261 9.94512 48.850826 47.694988 48.753056 4.75879 4.644457 4.184292