Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00058 ATGGGTGGGGTTACTTCTTCCATGGCTGCCAAATTCGCCTTCTTCCCTCCCAACCCACCCTCTTACAAGCTCCTCAAAGACCAACCCACTGGCCTTCTTCTCTTGGACCCTTTTCCCCACCGCGAAAATGTCGATGTCTGGAAGCTTCCCACTCGCAAAGGCACTGAGATCGTCGCTGTTTACATCCGCTACCCTATGGCTACTTCTACGCTTCTTTATTCCCATGGAAACGCCGCCGATGTTGGCCAGATGTACGAGCTTTTCATCGAGCTTAGCATCCATTTGCGCGTTAATCTTCTCGGGTACGATTATTCGGGATACGGGCAGTCCACTGGAAAGCCAAGCGAACACAATACTTATGCAGATATTGAAGCTGCATATAAGTGTCTTGAGGAGAAATATGGTGCTAAGCAAGAGGAAATAATCCTTTATGGTCAATCCGTGGGAAGTGGCCCGACTTTAGACCTTGCTGCACATTTGCCCCGACTACGAGCAGTCGTTCTGCATAGTCCTATACTATCGGGATTAAGAGTCATGTATCCAGTGAAGCGCACGTACTGGTTTGACATCTATAAGAATATTGATAAAATACCATATGTTAAATGCCCTGTGCTGGGAACATCCGACGACGTCGTTGATTTCTCTCACGGTAAACATCTCTGGGAGCTATGTCAAGAGAAATATGAACCCTTATGGCTCAAAGGGGGAAACCATTGTGATCTTGAACTCTTCCCTGAATACATCAGGCACCTCAAGAAATTCGTATCCACTGTTGAGAGATCGCTCTCACGAAGGAACGGTTCGAGGAAAAGCACAGACCGAATCGAGCAATCAAGAAGGAGCACGGATTGTTTCGAGGCCCCGAGAAGGAGCTCAGACAGGCGAGAGAAACCAAGGAAAAGCGTCGATAGGCTAGACAAATCAAGACCTCAAGGATACAAGTTTGACAACATTGAGAAGCTAGAGAAGCTAAAGATCTCAATTGACCAAGTAGAGAGATCAAGGAGAAGTGTGGAATACTACGAGAAACCGAGGAGAAGCATCGACCAACAGTTCGAAAGAGGTCGAAAGAGTGTGGATTGGTTGGATAGAATGCGCGCCGGAGGGCAATCGACTATGATCATGTCCCCAAACGAGATAGCAAACAATGCGATCAGGCACGCTCTCAGGGCGCTGCGCCAACGCCATCTAGTTGAAGAAGGTGCGCATGCTCCCGCTTTTCTCGCTCTCTCTCGGCCCATCATATCGCAGAGTTCGGAATGGAAAGAGAAAGCAGAGAAGCTGGAGTTGGAGCTTCAGCAATGTTACAAGGCTCAATCGCGATTGTCTGAGCAACTTGTGGTGGAAGTGGCTGAGGGTCGAGCTTCTAAATCTTCGATTGAGGAGAAAGATGCGACGATTGATAATCTGCAGCAGGAGTTAACTCGAGCCAGGGATGAATGCTCCCAGTTAAAGGCAGACTTAGAGATGAAAATTAAAGCCATGGAACTGGCTATATCTGAGAGCCAAGAACTTAAAGCACAGCTTGAAGCAATGACGATTAAAGCTAAGAATACAGAGGCTGAAAATAATATGTTGATTGACCGGTGGATGCTGCAAAAGATGAAGGATGCAGAACGCCTCAATGAGGCAAATGCACTCTATGAAGATATGATTGACCGACTCAAGGCTAGTGGTTTAGAGAAACTTGCTCAGCAACAGGTCGATGGTGTGGTCCGTCAGAGTGAAGAGGGTGCTGAATACTTCGTAGAATCCACCGTACCCTCTGTATGTAAGCATAGTATCCGTGCGCATGAAGGGGGCTGTGGTACTATTTTGTTTGAAAACAATTCAGGAAAGTTGATCAGTGGGGGGCAGGACCGAACCGTAAAAGTGTGGGATACAAATACTGGATCACTAAGTTCCACTTTACATGGGTGCCTTGGTTCTGTTCTTGATCTTGCAGTTACCCATGATAATAGATCTGTCATTGCAGCAAGCAGTTCAAACAACTTATATGTGTGGGACGTTGGTTCTGGAAGGGTGCGCCATACGCTTACTGGTCACTCCGACAAAGTATGTGCTGTAGATGTAAGCAAAATCTCGAGCCGACATGTTGTGAGTGCTGCATATGATCGCACCATCAAAATCTGGGATTTACAGAAGGGTTACTGCACTAAGACGCTCATTTTCCCCAGCAATTGCAATGCAGTTCGGTTCAGCATGGATGGACAGACCATTTGTTCTGGGCATATGGATGGAAATCTTCGGTTGTGGGATATCCAAACAGGAAAATTGCTCAGCGAAGTTGCTGGACACTCCCTTGCTGTTACATCTCTTTCTTTGTCACGTAATGGCAATACGATATTGACTAGCGGGAGAGATAACTTGCATAATTTATTCGATATTCGGTCTTTGGAAGTCTGCGGGACATTACGGGCATCTGGGAATAGAGTAGCTTCCAATTGGAGCCGTTCTTGCATCAGCCCAGATGACAACCATGTTGCTGCTGGTTCCGCTGATGGATCTGTCCATGTCTGGTCAATATCAAAGCATGATATTGTGAGCACTCTGAAAGAGCACACTGCCTCTGTTCTGTGTTGTTCATGGAGTGGGCTTGGGAAACCCCTTGCGTCTGCGGACAGAAATGGAATTATATTTACATGGAACTGA 2652 46.79 MGGVTSSMAAKFAFFPPNPPSYKLLKDQPTGLLLLDPFPHRENVDVWKLPTRKGTEIVAVYIRYPMATSTLLYSHGNAADVGQMYELFIELSIHLRVNLLGYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEEIILYGQSVGSGPTLDLAAHLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLGTSDDVVDFSHGKHLWELCQEKYEPLWLKGGNHCDLELFPEYIRHLKKFVSTVERSLSRRNGSRKSTDRIEQSRRSTDCFEAPRRSSDRREKPRKSVDRLDKSRPQGYKFDNIEKLEKLKISIDQVERSRRSVEYYEKPRRSIDQQFERGRKSVDWLDRMRAGGQSTMIMSPNEIANNAIRHALRALRQRHLVEEGAHAPAFLALSRPIISQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAEGRASKSSIEEKDATIDNLQQELTRARDECSQLKADLEMKIKAMELAISESQELKAQLEAMTIKAKNTEAENNMLIDRWMLQKMKDAERLNEANALYEDMIDRLKASGLEKLAQQQVDGVVRQSEEGAEYFVESTVPSVCKHSIRAHEGGCGTILFENNSGKLISGGQDRTVKVWDTNTGSLSSTLHGCLGSVLDLAVTHDNRSVIAASSSNNLYVWDVGSGRVRHTLTGHSDKVCAVDVSKISSRHVVSAAYDRTIKIWDLQKGYCTKTLIFPSNCNAVRFSMDGQTICSGHMDGNLRLWDIQTGKLLSEVAGHSLAVTSLSLSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVHVWSISKHDIVSTLKEHTASVLCCSWSGLGKPLASADRNGIIFTWN 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 290516 297405 - CmaCh11G000580.1 Cma11g00058 302567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00058 883 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 313 - -
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 595 632 - -
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 851 883 IPR001680 GO:0005515
Cma11g00058 883 MobiDBLite consensus disorder prediction 265 310 - -
Cma11g00058 883 Gene3D - 583 726 IPR015943 GO:0005515
Cma11g00058 883 ProSitePatterns Trp-Asp (WD) repeats signature. 614 628 IPR019775 -
Cma11g00058 883 Pfam WD domain, G-beta repeat 591 627 IPR001680 GO:0005515
Cma11g00058 883 Pfam WD domain, G-beta repeat 718 753 IPR001680 GO:0005515
Cma11g00058 883 Pfam WD domain, G-beta repeat 820 841 IPR001680 GO:0005515
Cma11g00058 883 Pfam WD domain, G-beta repeat 675 712 IPR001680 GO:0005515
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 679 716 - -
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 851 883 - -
Cma11g00058 883 Coils Coil 538 558 - -
Cma11g00058 883 Coils Coil 460 529 - -
Cma11g00058 883 Pfam Serine aminopeptidase, S33 70 175 IPR022742 -
Cma11g00058 883 SUPERFAMILY alpha/beta-Hydrolases 5 256 IPR029058 -
Cma11g00058 883 Gene3D - 727 883 IPR015943 GO:0005515
Cma11g00058 883 ProSitePatterns Trp-Asp (WD) repeats signature. 699 713 IPR019775 -
Cma11g00058 883 SMART WD40_4 672 712 IPR001680 GO:0005515
Cma11g00058 883 SMART WD40_4 798 841 IPR001680 GO:0005515
Cma11g00058 883 SMART WD40_4 844 883 IPR001680 GO:0005515
Cma11g00058 883 SMART WD40_4 756 795 IPR001680 GO:0005515
Cma11g00058 883 SMART WD40_4 630 669 IPR001680 GO:0005515
Cma11g00058 883 SMART WD40_4 715 753 IPR001680 GO:0005515
Cma11g00058 883 SMART WD40_4 588 627 IPR001680 GO:0005515
Cma11g00058 883 PRINTS G protein beta WD-40 repeat signature 699 713 IPR020472 -
Cma11g00058 883 PRINTS G protein beta WD-40 repeat signature 614 628 IPR020472 -
Cma11g00058 883 PRINTS G protein beta WD-40 repeat signature 740 754 IPR020472 -
Cma11g00058 883 Pfam Autophagy protein 16 (ATG16) 417 542 IPR013923 -
Cma11g00058 883 Coils Coil 418 445 - -
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 822 850 IPR001680 GO:0005515
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 679 721 IPR001680 GO:0005515
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 730 762 IPR001680 GO:0005515
Cma11g00058 883 CDD WD40 591 883 - -
Cma11g00058 883 Gene3D - 457 531 - -
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 637 678 IPR001680 GO:0005515
Cma11g00058 883 ProSitePatterns Trp-Asp (WD) repeats signature. 740 754 IPR019775 -
Cma11g00058 883 Coils Coil 120 140 - -
Cma11g00058 883 Gene3D alpha/beta hydrolase 41 257 IPR029058 -
Cma11g00058 883 SUPERFAMILY WD40 repeat-like 587 883 IPR036322 GO:0005515
Cma11g00058 883 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 1 313 - -
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 636 IPR001680 GO:0005515
Cma11g00058 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 763 798 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00058 K17890 ATG16L1; autophagy-related protein 16-1 - csv:101219308 924.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00080 Cma11g00058 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00058 Cma-Chr11:290516 Cma15g00215 Cma-Chr15:1048189 2.11E-136 dispersed
Cma18g00680 Cma-Chr18:6282136 Cma11g00058 Cma-Chr11:290516 1.56E-27 dispersed
Cma11g01451 Cma-Chr11:9570059 Cma11g00058 Cma-Chr11:290516 8.72E-15 transposed
Cma10g00080 Cma-Chr10:329896 Cma11g00058 Cma-Chr11:290516 0 wgd
Cma11g00058 Cma-Chr11:290516 Cma11g01474 Cma-Chr11:9704234 0 wgd
Cma11g00058 Cma-Chr11:290516 Cma14g00692 Cma-Chr14:3507144 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma11g00058 Cma_Chr11 FPKM 10.751577 12.843716 9.651196 10.736168 12.813263 13.321014 11.858733 8.314672 9.433558 8.939719