Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma11g00059 ATGGCATTCCCTGCCTCCAAACTCCTTCCCTTCTTCGCTTTTCTCCCCCTCCTCCAAGTCTATGCCCGACCGAGCCTTGATCTTTCAGATCTTAGAGCCTTTAATGTCATCAAGAATGACTTGGGCATTGACGCTCAACTCTCCTCCTCCCCATGCGACCTCGCCGGTGTCTTCTGCCAGCGCCGGCTCTCCGACAATGAAACTTATGTTTTGAGGATCACCAGGCTCATTTTCAAGTCCGAAGGTCTTACCGGTTCTCTTTCTCCGGCTATTGGGCGACTGACGGAGTTGAAACAGCTTACGGTTTCTGACAACCACCTCGTTGGCCACGTACCTGCACAGATTGTTGACTGCCGGAAACTGGAAATTCTCCATCTCCAAAGCAACCAGTTTTCTAGCAAAGTTCCATCTGGGTTGTCCTCGTTGATTCGCCTTCGAGACATGGATCTTTCGTCCAATAAATTCTCGGGGAGTTTGGATTTCTTGAAGCATTTCCGCAACATGGAAAGTCTTTCTATTGCCAATAATTACTTCACGGGGAAGATCCCAGCTTCAATTCGGTCTTTTCGCAATCTTCGAGTCTTCAACTTCTCTGGAAATCGCCTTCTCGAAAGCTCAGCCCCTGTCGTGAAAGGCGTCGAGCTCTACTCGGCAACCAGTGTCCTCAAGCGTTATAAGTTAGCTGAGAATTCCACTACGAAAGGTAAGCCCAGTGCCGTGGCCACAGCGCCAACTTCGAGTGCTCAATCTCCATCTCCCGCAGCATCCCCTCATAAGCATCGGAAATATAAAGCAGGAAAGGTATTAGGTTGGCTACTTGGATTGCTCGCAGGAGCAATTGCTGGAACTTTGTCAGGGTTTACCTTTTCTCTACTGTTTAAAATCATCATAGCAGTTATAAAAGGTGGAACCAAGAATTCGGGCCACTCAATCTATGCTCCTAAGCTAATAAAACGAGAGGATTTGGCTTTTCTAGAGAAAGACGATGTGCTTGCATCACTCGAGATGATTGGTAAAGGTGGATGTGGAGAAGTTTACAAGGCCGAATTACCAGAAAAAAGCGGGAGAATGTTTGCGATAAAGAAGATAGCTCAACCCCCAAAGGATGCGGCCGAGTTAGCTAACGAGGAAAGCAAGTTTATGAACAAGAAAATGCATCAGATCAAGTCAGAGATTAGAACTGTGGGTGAAATCCGGCATCGGAATCTTCTTCCTCTTGTAGCCCATGTACTCCGTCCCGACTGCCACTACCTTGTGTATGAATTGATGAAGAATGGCAGCTTGCAAGACATGTTGAATCAGGTTTCGGCAGGAGCGAAAGAACTAGATTGGCTTACTCGCCATAAGATTGCTCTCGGAGTGGCATCTGGGCTGGAGTATCTTCACATGAACCATACCCCACGTATTATTCACAGGGATCTGAAGCCTGCAAATACTTTGCTCGACGACAACATGGAAGCTCGAATTGCTGATTTTGGGCTAGCAAAAGTAATGCCAGATGCTCAAACTCACATGACGGCTTCCAATGTTGCAGGTACCGTAGGATACATCGCACCAGAGTATCATCAGACCTTAAAGTTCACTGATAAGTGCGATACGTACGCCTTTGGGGTTCTGCTAGGGGTCTTGGTAATTGGGAAACTTCCATCTGATGAGTTTTTCCAGGACACGGATGAGATGAGTTTGATCAAGTGGATGAGGAATGTTATGACTTCGGATAATCCTAGGAGAGCCATTGATCCGAAGCTCCTGGGAAATGGCTGGGAGGAGCAAATGCTCTTGGCCCTCAAAATTGCCTGCTTTTGCACTATGGATAATCCAAAAGAGAGGCCTAACAGTAAGGATGTCAGATGCATGCTATTACAGATCAAGCATGATGTACCTAAAACTCCCTCTTCTCGGAACATCTAA 1911 46.83 MAFPASKLLPFFAFLPLLQVYARPSLDLSDLRAFNVIKNDLGIDAQLSSSPCDLAGVFCQRRLSDNETYVLRITRLIFKSEGLTGSLSPAIGRLTELKQLTVSDNHLVGHVPAQIVDCRKLEILHLQSNQFSSKVPSGLSSLIRLRDMDLSSNKFSGSLDFLKHFRNMESLSIANNYFTGKIPASIRSFRNLRVFNFSGNRLLESSAPVVKGVELYSATSVLKRYKLAENSTTKGKPSAVATAPTSSAQSPSPAASPHKHRKYKAGKVLGWLLGLLAGAIAGTLSGFTFSLLFKIIIAVIKGGTKNSGHSIYAPKLIKREDLAFLEKDDVLASLEMIGKGGCGEVYKAELPEKSGRMFAIKKIAQPPKDAAELANEESKFMNKKMHQIKSEIRTVGEIRHRNLLPLVAHVLRPDCHYLVYELMKNGSLQDMLNQVSAGAKELDWLTRHKIALGVASGLEYLHMNHTPRIIHRDLKPANTLLDDNMEARIADFGLAKVMPDAQTHMTASNVAGTVGYIAPEYHQTLKFTDKCDTYAFGVLLGVLVIGKLPSDEFFQDTDEMSLIKWMRNVMTSDNPRRAIDPKLLGNGWEEQMLLALKIACFCTMDNPKERPNSKDVRCMLLQIKHDVPKTPSSRNI 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 301170 303080 - CmaCh11G000590.1 Cma11g00059 302568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma11g00059 636 SUPERFAMILY L domain-like 30 205 - -
Cma11g00059 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Cma11g00059 636 SMART serkin_6 331 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00059 636 Gene3D Transferase(Phosphotransferase) domain 1 427 634 - -
Cma11g00059 636 SUPERFAMILY Protein kinase-like (PK-like) 333 625 IPR011009 -
Cma11g00059 636 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE KINASE 6 625 - -
Cma11g00059 636 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 625 - -
Cma11g00059 636 Pfam Protein kinase domain 334 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00059 636 MobiDBLite consensus disorder prediction 234 259 - -
Cma11g00059 636 MobiDBLite consensus disorder prediction 234 254 - -
Cma11g00059 636 ProSiteProfiles Protein kinase domain profile. 331 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma11g00059 636 Gene3D Ribonuclease Inhibitor 35 162 IPR032675 -
Cma11g00059 636 Gene3D Ribonuclease Inhibitor 163 245 IPR032675 -
Cma11g00059 636 Gene3D Phosphorylase Kinase; domain 1 331 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00059 Cma-Chr11:301170 Cma10g00179 Cma-Chr10:821374 5.60E-78 dispersed
Cma11g00059 Cma-Chr11:301170 Cma02g01717 Cma-Chr2:9672648 5.15E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68866 PF00069 Pkinase 5.80E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma11g00059 - - cpep:111793199 1142.49